RNA id: CI01000052_02077422_02080093.mRNA


Basic Information

Item Value
RNA id CI01000052_02077422_02080093.mRNA
length 560
RNA type mRNA
GC content 0.49
exon number 3
gene id CI01000052_02077422_02080093
representative True

Chromosome Information

Item Value
chromosome id CI01000052
NCBI id null
chromosome length 3494004
location 2077422 ~ 2080335 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGAGCAGGGTGTTGATTCTGTCCGTGCTCCTGCTGTCCCTGAGCTGGTGCAGATGTGCCGTCATCACAGGGGCGTGTGACAGGGATGTGCAGTGTGGTGTGGGTCTGTGCTGTGCTGTGAGTCTGTGGCTCCGAGGCCTGCGTATGTGCACACCGCAGGGGCTGGAAGGAGACGAATGCCACCCGTACAGCCATAAGGTTCCTTTCCCCGGAAAGAGACAACATCACACTTGCCCCTGCCTGCCACATCTGGTCTGCACCAGGTACAGCGACAACAGATATCGCTGCACCAGCGACTTCAAAAACATAGACTTTTAATACTGGAAAGAGTGTGAGGAAATAGAGGAATGGAGGAGGGGAATACTTGAAAGCAGGATAGCACAAGAAGATTAATAACAAGTGCCATAGCACCTTTCTGCTCATTTTTATTTTTCACACTCATGCACTTTGCACTACAAAAACGTTGTTATCCAGCTTCCACACAAATGCCGACATATTCACAGTGGCACAAGGTCTATGTCAGAATCACTGGTTTACTTTGGCATCCACTACACTTGATA

Function

GO:

id name namespace
GO:0000187 activation of MAPK activity biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253769 lncRNA upstream 73743 2003427 ~ 2003679 (+) True G223718
TU253765 lncRNA upstream 77514 1999666 ~ 1999908 (+) True G223714
TU253726 lncRNA upstream 77877 1980453 ~ 1999545 (+) False G223691
TU253737 lncRNA downstream 18205 2098540 ~ 2104299 (+) True G223694
TU253824 lncRNA downstream 82517 2162852 ~ 2163120 (+) True G223770
TU253827 lncRNA downstream 94692 2175027 ~ 2175807 (+) True G223773
TU253829 lncRNA downstream 101249 2181584 ~ 2181793 (+) True G223775
TU253889 lncRNA downstream 182459 2262794 ~ 2288556 (+) True G223825
CI01000052_02040372_02042933.mRNA mRNA upstream 34181 2040372 ~ 2043241 (+) True CI01000052_02040372_02042933
CI01000052_02030095_02036209.mRNA mRNA upstream 40787 2029869 ~ 2036635 (+) True CI01000052_02030095_02036209
CI01000052_01929151_01946893.mRNA mRNA upstream 130250 1929151 ~ 1947172 (+) True CI01000052_01929151_01946893
CI01000052_01925657_01927599.mRNA mRNA upstream 149641 1925657 ~ 1927781 (+) True CI01000052_01925657_01927599
CI01000052_01896445_01921839.mRNA mRNA upstream 155453 1894819 ~ 1921969 (+) True CI01000052_01896445_01921839
CI01000052_02120654_02122805.mRNA mRNA downstream 40025 2120360 ~ 2123260 (+) True CI01000052_02120654_02122805
CI01000052_02167466_02172193.mRNA mRNA downstream 86249 2166584 ~ 2173036 (+) True CI01000052_02167466_02172193
CI01000052_02182830_02186951.mRNA mRNA downstream 101605 2181940 ~ 2187178 (+) True CI01000052_02182830_02186951
CI01000052_02310477_02312424.mRNA mRNA downstream 229544 2309879 ~ 2312907 (+) True CI01000052_02310477_02312424
CI01000052_02374792_02389760.mRNA mRNA downstream 294377 2374712 ~ 2390103 (+) False CI01000052_02374792_02389760
TU253572 other upstream 806495 1270492 ~ 1270927 (+) True G223545
TU253734 other downstream 18205 2098540 ~ 2104299 (+) False G223694
TU255127 other downstream 1350801 3431136 ~ 3460136 (+) True G224953

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00071237 True 896 mRNA 0.46 3 NC_007119.7 24714733 ~ 24730185 (-)