RNA id: TCONS_00071237


Basic Information

Item Value
RNA id TCONS_00071237
length 896
RNA type mRNA
GC content 0.46
exon number 3
gene id XLOC_036454
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 24714733 ~ 24730185 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTGACAGAGCAGGGGAAGATCAGCAGAGAAGTCCAAGTATCTCCTCAGGGCCACAGCAACCTCATCCGTGGGACAGAATAGAGAGACATTATTAGGGAGAATTAGAGAGACACAGATCAAGCTTTTAGAGTGTTTCGTGGTGTGTTTGTTTGTCCCGCTGCTGCTATGAGCAGGGTTTTGATTTTGTGTTTGCTCCTGCTGTCCATGAGCTGCTGCAGAGGTGCCGTCATCACTGGGgcGTGTGACAGGGATGTGCAGTGTGGTGTGGGTCTCTGCTGTGCTGTGAGTCTGTGGCTCCGAGGTCTCCGCATGTGCACACCGCAGGGGCTGGAGGGAGACGAATGCCATCCATACAGCCACAAGGTTCCTTTCCCTGGCAAGAGACAGCACCACACTTGCCCCTGCCTGCCACATTTGGTCTGTACCAGATACGCTGACAACAGATACCGCTGTACCAGTGACTTCAAAAACATAGACTTTTAACAGGAGAAAGAATGCGCGAAAAAAGGAATGGAGGAGTTGAATACTTGAAAAAGAAAGCAGGACAGCACAAGAAGATTAACAAGTGCCATAGCACCTCTCTGCTCATTTTTCACTCTCATGCACTTTGCACTACAAAACTACTTTTATCCAGCTTCTCCAGAAACGCAGATGTACATCATCTCCAGCAGCACAAGGTCTACCTCAGAATCATTGGTTTACCTTGGCATCCaccacacccaaacacacacataaattagTTTCATTACCTGACCTTTATGTTAAGAGTATGCAAACAGACATTTAGTAAGAAACGTGCTTCAGAGAGTGTCACATTTCTGGTTGAATTCCATCTTCAATATGCTGTGCATTTGTTGAAGGCTTAGTTATTGTAATTAAACTATAATCAGtctaa

Function

GO:

id name namespace
GO:0045765 regulation of angiogenesis biological_process
GO:0007623 circadian rhythm biological_process
GO:0000187 activation of MAPK activity biological_process
GO:0008284 positive regulation of cell population proliferation biological_process
GO:0005576 extracellular region cellular_component
GO:0001664 G protein-coupled receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070928-34 Predicted to enable G protein-coupled receptor binding activity. Predicted to be involved in circadian rhythm; positive regulation of cell population proliferation; and regulation of angiogenesis. Predicted to be active in extracellular region. Orthologous to human PROK1 (prokineticin 1).

Ensembl:

ensembl_id ENSDART00000113197

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072458 lncRNA downstream 137165 24325248 ~ 24577568 (-) True XLOC_036447
TCONS_00072459 lncRNA downstream 216739 24419950 ~ 24497994 (-) True XLOC_036450
TCONS_00072460 lncRNA downstream 239638 24441528 ~ 24475095 (-) True XLOC_036452
TCONS_00072457 lncRNA downstream 417063 24297371 ~ 24297670 (-) True XLOC_036446
TCONS_00072043 lncRNA downstream 498911 24192699 ~ 24215822 (-) True XLOC_036444
TCONS_00072461 lncRNA upstream 50222 24780407 ~ 24780988 (-) True XLOC_036455
TCONS_00072462 lncRNA upstream 126801 24856986 ~ 24909039 (-) False XLOC_036458
TCONS_00072463 lncRNA upstream 135496 24865681 ~ 24880210 (-) False XLOC_036458
TCONS_00071240 lncRNA upstream 135496 24865681 ~ 24908943 (-) False XLOC_036458
TCONS_00072464 lncRNA upstream 135496 24865681 ~ 24909039 (-) True XLOC_036458
TCONS_00071236 mRNA downstream 17147 24500116 ~ 24697586 (-) True XLOC_036453
TCONS_00071235 mRNA downstream 211736 24422393 ~ 24502997 (-) False XLOC_036451
TCONS_00071234 mRNA downstream 211736 24422393 ~ 24502997 (-) True XLOC_036451
TCONS_00071232 mRNA downstream 348007 24352719 ~ 24366726 (-) False XLOC_036449
TCONS_00071231 mRNA downstream 348007 24352719 ~ 24366726 (-) False XLOC_036449
TCONS_00071238 mRNA upstream 58314 24788499 ~ 24791060 (-) True XLOC_036456
TCONS_00071239 mRNA upstream 69503 24799688 ~ 24803111 (-) True XLOC_036457
TCONS_00071241 mRNA upstream 198447 24928632 ~ 24965308 (-) False XLOC_036459
TCONS_00071242 mRNA upstream 208022 24938207 ~ 24965308 (-) True XLOC_036459
TCONS_00071243 mRNA upstream 237913 24968098 ~ 24970790 (-) True XLOC_036460
TCONS_00071202 other downstream 1591859 23122762 ~ 23122874 (-) True XLOC_036425
TCONS_00071201 other downstream 1592361 23122151 ~ 23122372 (-) False XLOC_036425
TCONS_00071194 other downstream 1868935 22844700 ~ 22845798 (-) True XLOC_036420
TCONS_00071192 other downstream 1931511 22766456 ~ 22783222 (-) False XLOC_036419
TCONS_00071180 other downstream 2175783 22536028 ~ 22538950 (-) True XLOC_036416
TCONS_00071249 other upstream 313016 25043201 ~ 25044808 (-) True XLOC_036463
TCONS_00071268 other upstream 920044 25650229 ~ 25665761 (-) False XLOC_036471
TCONS_00071278 other upstream 1021940 25752125 ~ 25755298 (-) False XLOC_036475
TCONS_00071280 other upstream 1026497 25756682 ~ 25761038 (-) False XLOC_036475
TCONS_00071284 other upstream 1088437 25818622 ~ 25846188 (-) False XLOC_036477

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000052_02077422_02080093.mRNA True 560 mRNA 0.49 3 CI01000052 2077422 ~ 2080335 (+)