RNA id: TCONS_00072460


Basic Information

Item Value
RNA id TCONS_00072460
length 250
lncRNA type read_through
GC content 0.38
exon number 2
gene id XLOC_036452
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 24441528 ~ 24475095 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTACCTGGAGCATGACTGgtccaaatttaccctctctcaAGAATGCTGTGATCTGATGTGGGCTTGTCTGCAGCAGATTCCAGAGCACAGAATTCTTCTAGGACAGATGCCTTACCACGACTGGTTCATGCTGGAGTAGCCAGTTGACACCTTTGCTGTTAATATATAGTGTcttgttattgtattattcacTTCTTTATTGTTACAGTTGTTTTTGTGTATGtctctaataaaaatatatatttttgaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072457 lncRNA downstream 143858 24297371 ~ 24297670 (-) True XLOC_036446
TCONS_00072043 lncRNA downstream 225706 24192699 ~ 24215822 (-) True XLOC_036444
TCONS_00071223 lncRNA downstream 657931 23782623 ~ 23783597 (-) True XLOC_036440
TCONS_00072456 lncRNA downstream 735661 23688651 ~ 23705867 (-) False XLOC_036437
TCONS_00071211 lncRNA downstream 857317 23581510 ~ 23584211 (-) False XLOC_036436
TCONS_00072461 lncRNA upstream 305312 24780407 ~ 24780988 (-) True XLOC_036455
TCONS_00072462 lncRNA upstream 381891 24856986 ~ 24909039 (-) False XLOC_036458
TCONS_00072463 lncRNA upstream 390586 24865681 ~ 24880210 (-) False XLOC_036458
TCONS_00071240 lncRNA upstream 390586 24865681 ~ 24908943 (-) False XLOC_036458
TCONS_00072464 lncRNA upstream 390586 24865681 ~ 24909039 (-) True XLOC_036458
TCONS_00071232 mRNA downstream 74802 24352719 ~ 24366726 (-) False XLOC_036449
TCONS_00071231 mRNA downstream 74802 24352719 ~ 24366726 (-) False XLOC_036449
TCONS_00071233 mRNA downstream 74802 24363844 ~ 24366726 (-) True XLOC_036449
TCONS_00071230 mRNA downstream 109244 24329433 ~ 24332284 (-) True XLOC_036448
TCONS_00071229 mRNA downstream 188595 24246659 ~ 24252933 (-) True XLOC_036445
TCONS_00071236 mRNA upstream 25021 24500116 ~ 24697586 (-) True XLOC_036453
TCONS_00071237 mRNA upstream 239638 24714733 ~ 24730185 (-) True XLOC_036454
TCONS_00071238 mRNA upstream 313404 24788499 ~ 24791060 (-) True XLOC_036456
TCONS_00071239 mRNA upstream 324593 24799688 ~ 24803111 (-) True XLOC_036457
TCONS_00071241 mRNA upstream 453537 24928632 ~ 24965308 (-) False XLOC_036459
TCONS_00071202 other downstream 1318654 23122762 ~ 23122874 (-) True XLOC_036425
TCONS_00071201 other downstream 1319156 23122151 ~ 23122372 (-) False XLOC_036425
TCONS_00071194 other downstream 1595730 22844700 ~ 22845798 (-) True XLOC_036420
TCONS_00071192 other downstream 1658306 22766456 ~ 22783222 (-) False XLOC_036419
TCONS_00071180 other downstream 1902578 22536028 ~ 22538950 (-) True XLOC_036416
TCONS_00071249 other upstream 568106 25043201 ~ 25044808 (-) True XLOC_036463
TCONS_00071268 other upstream 1175134 25650229 ~ 25665761 (-) False XLOC_036471
TCONS_00071278 other upstream 1277030 25752125 ~ 25755298 (-) False XLOC_036475
TCONS_00071280 other upstream 1281587 25756682 ~ 25761038 (-) False XLOC_036475
TCONS_00071284 other upstream 1343527 25818622 ~ 25846188 (-) False XLOC_036477

Expression Profile

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