Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00071211 |
| length | 846 |
| lncRNA type | retained_intron |
| GC content | 0.42 |
| exon number | 3 |
| gene id | XLOC_036436 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007119.7 |
| NCBI id | CM002892.2 |
| chromosome length | 54304671 |
| location | 23579974 ~ 23612462 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0089709 | L-histidine transmembrane transport | biological_process |
| GO:0032329 | serine transport | biological_process |
| GO:0015816 | glycine transport | biological_process |
| GO:0006868 | glutamine transport | biological_process |
| GO:0003333 | amino acid transmembrane transport | biological_process |
| GO:0005887 | integral component of plasma membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0015171 | amino acid transmembrane transporter activity | molecular_function |
| GO:0015186 | L-glutamine transmembrane transporter activity | molecular_function |
| GO:0015187 | glycine transmembrane transporter activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040718-395 | Predicted to enable L-glutamine transmembrane transporter activity and glycine transmembrane transporter activity. Predicted to be involved in amino acid transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including alar plate midbrain region; margin; pleuroperitoneal region; segmental plate; and tail bud. Orthologous to human SLC38A5 (solute carrier family 38 member 5). |
| ensembl_id | ENSDART00000139895 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00072455 | lncRNA | downstream | 23588 | 23554027 ~ 23557922 (-) | True | XLOC_036434 |
| TCONS_00071206 | lncRNA | downstream | 191268 | 23387884 ~ 23390242 (-) | True | XLOC_036432 |
| TCONS_00072454 | lncRNA | downstream | 331306 | 23240862 ~ 23250204 (-) | True | XLOC_036430 |
| TCONS_00072453 | lncRNA | downstream | 336061 | 23240862 ~ 23245449 (-) | False | XLOC_036430 |
| TCONS_00072042 | lncRNA | downstream | 361554 | 23217498 ~ 23219956 (-) | True | XLOC_036428 |
| TCONS_00072456 | lncRNA | upstream | 104440 | 23688651 ~ 23705867 (-) | False | XLOC_036437 |
| TCONS_00071223 | lncRNA | upstream | 198412 | 23782623 ~ 23783597 (-) | True | XLOC_036440 |
| TCONS_00072043 | lncRNA | upstream | 608488 | 24192699 ~ 24215822 (-) | True | XLOC_036444 |
| TCONS_00072457 | lncRNA | upstream | 713160 | 24297371 ~ 24297670 (-) | True | XLOC_036446 |
| TCONS_00072458 | lncRNA | upstream | 741037 | 24325248 ~ 24577568 (-) | True | XLOC_036447 |
| TCONS_00071208 | mRNA | downstream | 2850 | 23560183 ~ 23578660 (-) | False | XLOC_036435 |
| TCONS_00071209 | mRNA | downstream | 8426 | 23567471 ~ 23573084 (-) | True | XLOC_036435 |
| TCONS_00071207 | mRNA | downstream | 165148 | 23415023 ~ 23416362 (-) | True | XLOC_036433 |
| TCONS_00071205 | mRNA | downstream | 253246 | 23252850 ~ 23328264 (-) | True | XLOC_036431 |
| TCONS_00071204 | mRNA | downstream | 341354 | 23227100 ~ 23240156 (-) | True | XLOC_036429 |
| TCONS_00071214 | mRNA | upstream | 88043 | 23672254 ~ 23684659 (-) | False | XLOC_036437 |
| TCONS_00071215 | mRNA | upstream | 88043 | 23672254 ~ 23702295 (-) | False | XLOC_036437 |
| TCONS_00071216 | mRNA | upstream | 105781 | 23689992 ~ 23701880 (-) | True | XLOC_036437 |
| TCONS_00071217 | mRNA | upstream | 169062 | 23753273 ~ 23758312 (-) | False | XLOC_036438 |
| TCONS_00071218 | mRNA | upstream | 169687 | 23753898 ~ 23776399 (-) | False | XLOC_036438 |
| TCONS_00071202 | other | downstream | 458636 | 23122762 ~ 23122874 (-) | True | XLOC_036425 |
| TCONS_00071201 | other | downstream | 459138 | 23122151 ~ 23122372 (-) | False | XLOC_036425 |
| TCONS_00071194 | other | downstream | 735712 | 22844700 ~ 22845798 (-) | True | XLOC_036420 |
| TCONS_00071192 | other | downstream | 798288 | 22766456 ~ 22783222 (-) | False | XLOC_036419 |
| TCONS_00071180 | other | downstream | 1042560 | 22536028 ~ 22538950 (-) | True | XLOC_036416 |
| TCONS_00071249 | other | upstream | 1458990 | 25043201 ~ 25044808 (-) | True | XLOC_036463 |
| TCONS_00071268 | other | upstream | 2066018 | 25650229 ~ 25665761 (-) | False | XLOC_036471 |
| TCONS_00071278 | other | upstream | 2167914 | 25752125 ~ 25755298 (-) | False | XLOC_036475 |
| TCONS_00071280 | other | upstream | 2172471 | 25756682 ~ 25761038 (-) | False | XLOC_036475 |
| TCONS_00071284 | other | upstream | 2234411 | 25818622 ~ 25846188 (-) | False | XLOC_036477 |
