RNA id: TCONS_00072455


Basic Information

Item Value
RNA id TCONS_00072455
length 3601
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id XLOC_036434
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 23554027 ~ 23557922 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cagcagtttattgttattgctttaaaaaacacCTATTAGAACTCCCGAACCCCAGAATAccatgataataaaataatatttatcacAAACAATCACATTAACGTGAACCTACACTAACATCTGTAAATACAAAGAGGAAATATTTTGAGAAGCCACCACAATTAGGAAGTTTCTGTTTAGCTCAACATTCAACACCAAAGAAAAGACACAACAGGACAAAGAAAGTCAATGTGGCATTAAATGTTCCTTAGAGACCCAGATGACGTTCTGCACAATACGTTTACTGTGGAGAGGAAAGAAGTGCGGTTTGGACTTTGAGAATAGCTTGTCCTCCACCCTTCAAGACCAGATAACATGTCTGGGGTTACAAACCACTGAGCGTTTCATTGAGCAAATTTCACACACAGAGTCATTATAAATACTCCTCCAACCAATCCAATGAAGAAAATCCATCACTTACGCTTTCAAAATGATGACATTAGAGGACTAGACAAAGTATATGTTCTCAGAAGGAAATTACACAACACATTTTCTGTCAAAATCAGCCCTGTCCCACCACCAAAGAGCACAACTCACATGAATATGTACACTCTCACAATAAATATGTTGCATGGtgtggcagagagagagagagagagagagagagagagagagagagagagggaaagaaagGAGGTTAGTTTATAATCCTGAACAGTGACTAGTCCAATACATACATTTTCTATGTACATGTGTCATTGTCACACAACACAAAGCACAGATACTGTGTTTATACACGAGCAACAACATGACCACATTTCACCATTAACAAAACAGCAGAATACAAAAATGTGTCGATTATGGATTGAGAGTGAGAATGTTTTTAGTGGTCCGACTATCAACAGAGTCCCAAAGACAGAAGAGACCAGGCTGaacaaaaaaactgtatataCAGCAAATCAGGGACGATGGGTTTGCTCATAGCTGTTGGAGGATCAACATTTGTTATACGAGACACAAATGACTCGCATTTTGGTTGCCTTCACATTTAAAGATTGTTAATGTCGGTGTGAAGTTTGTATCAGAAGTCTTTTTCAAATAGATACAGCTAATGCTGACTAAAAAGGGATTTTGAGTTTTGCAGATGTCTTTCATTTTGGTCCACAGTTTTGTCCTAATGAAGGCAATGATCCAATCATGGTAACAAAAATTCTGGAATCATAGCTGCATGTTTTACTGCAAGATTtatctattttatatacattttatttgataatttgacaagtagaaacattttaaatgcatgttttttttataatgaccaatactgttgttgcttttttataGCACAGTAAGTTTGATCTGGAGCATTTAGTTTAACCGTTACACATCAAACTAAAATATTGAGGGTTTTTTTCCTGTCATAGATCAAGACTAAAATTATAGCTCATATGCCTGGAGGACTAAAAGTGATACTTAAACATTGATAGAATTTagttattgattaattaaattaaattaaaaataatcaagtaaataagtagtttaaatgcacatttcaatGTGAATAGTAGTTTTATGCTTAAACGTCACTCCTAGTTGTCCATTCCTATAGAAACTCTATAAAAAAGGCAAATGTAaatccaaaaaaaacaaaacgtttATGGTCAAAAGATATATTGTCCTATAATTATAGTCTTGTGCATACGTTCATCTTAAAATGCTCCAGAAAGTTCTTTCCACTGCTGTATTTTACGGTTTGAGGGTTTAGACACTCCCAACTGAATCTGCAAACTCTAAACTCAACCCCTCTATACCATGTTTTACCATGTCTAAAGGTATTTAAACAGCAGTCATTCATGTAATGTATCATAAAGGGTATAGCTTATATTTTACATCAAATGGCAGTAGTTTTGCTGGTGTGGCTGGACGTGTTCAAGAacttacagtggggaaaataaatattcaaaacatcaagtttttttctttctggaaataatatttctaaaggagctgttgacttcattgaagcagattttggtaaaaacccaaacaatacaaacataaaaataaaacaaaacaacaacaaaaaaaagatctgagtaatgagttatgtgtaataacaatgaaatgacacaaggttgatttactgaactactgaaacgtgtttaatactttatataaaaggcttttttggtgctggcagcttaaagatgactCTCATATttagaatgaagtcacatgaattgctcaggtgtgatttttttcacagacctcaacagagtgtaaaatctTGATGgctctgtgggtctcgtctatcaagtctgatctttaatttgtattttataatagattcagatcaggtgattggcttctttctcagcttgattttctttctctgaaagcatttgatagtttccttgtctgtgttttgaatcattgtcttgctgaaatgtctactttagtttcatcttcatcatcctggtaatgcaGATGTTGGACAAAATCAGAtaatattcaagagttcacacttagctgatgattgataataaaagcttgtttggcatgctgtcccaaggagagagccctgagcttatgagatcctcgagcatGTCAcggccatatcaccctgcagcccaagaccggttactcactgaagctaagcagggctgagcctggtcagtacctggatggtagaccacttggggaaaaactaggttgctgctggaagtggtgttagtgaggccagcagggggctctcaacctgtggtctgtgtgagtgaaggggtgagtgagtgagtaaaggggacactatactgtcagagtgcgccatctttcggatgagacgttaaaccgaggtcctgactctctgtggtcattaaaaatcccatggcacttctcgtaaagagtaggggtgtaaccccggtgtcctggccaaagccCCTCTATCAGCACTTAGGATCATGGCTTCCCAATTATCCCCATCCAccctctatcactgtctctccactccaccaatagctgttgtgtagtgagcgcactggcaccattgtcctgtggcagccgtcgcatcatccaagtggatgctgcacactggtagtggtCTGGAGAGACACGCTTATGGCCATACAcagtaaatgcgctatataaatacacttttacattttttttatgacatgGCCTGCCTCCTGTTTGCAGCTTGAGCTCAGATAGACCTCGATGAACTCTCCCCGGCTTATTTGTAGCTAGTGACAAATATGGATGACTGAGGAGAGGTGTACTCGCTAAGAGCTTGACTATGGCATCAATTTTGTGTGTTCAATTTACTTGAGGAGTGTAACTACtgggagatttcagctgctgtctggtcttTTACTGCCTTCCtatacctccctttcttcatgtgttcaatacttttccctgtgtcatttcatttcacataaataaaaataataataaataattaattaattaatttgtaaactaattagttttgctttcttgcatatatggatttctttggttgttaccaacatctggggaaagTTTCGAgttaacagcacctttagaaatactttttctgagaaaaatagtgacgtatttattacatattttccccgct

Function

GO:

id name namespace
GO:0045446 endothelial cell differentiation biological_process
GO:0061028 establishment of endothelial barrier biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00071206 lncRNA downstream 163785 23387884 ~ 23390242 (-) True XLOC_036432
TCONS_00072454 lncRNA downstream 303823 23240862 ~ 23250204 (-) True XLOC_036430
TCONS_00072453 lncRNA downstream 308578 23240862 ~ 23245449 (-) False XLOC_036430
TCONS_00072042 lncRNA downstream 334071 23217498 ~ 23219956 (-) True XLOC_036428
TCONS_00072041 lncRNA downstream 361927 23190987 ~ 23192100 (-) True XLOC_036427
TCONS_00071212 lncRNA upstream 23588 23581510 ~ 23583855 (-) False XLOC_036436
TCONS_00071211 lncRNA upstream 23588 23581510 ~ 23584211 (-) False XLOC_036436
TCONS_00072456 lncRNA upstream 130729 23688651 ~ 23705867 (-) False XLOC_036437
TCONS_00071223 lncRNA upstream 224701 23782623 ~ 23783597 (-) True XLOC_036440
TCONS_00072043 lncRNA upstream 634777 24192699 ~ 24215822 (-) True XLOC_036444
TCONS_00071207 mRNA downstream 137665 23415023 ~ 23416362 (-) True XLOC_036433
TCONS_00071205 mRNA downstream 225763 23252850 ~ 23328264 (-) True XLOC_036431
TCONS_00071204 mRNA downstream 313871 23227100 ~ 23240156 (-) True XLOC_036429
TCONS_00071203 mRNA downstream 359619 23190986 ~ 23194408 (-) False XLOC_036427
TCONS_00071200 mRNA downstream 472360 23044917 ~ 23081667 (-) True XLOC_036424
TCONS_00071208 mRNA upstream 2261 23560183 ~ 23578660 (-) False XLOC_036435
TCONS_00071209 mRNA upstream 9549 23567471 ~ 23573084 (-) True XLOC_036435
TCONS_00071210 mRNA upstream 22052 23579974 ~ 23612462 (-) False XLOC_036436
TCONS_00071213 mRNA upstream 23974 23581896 ~ 23599096 (-) True XLOC_036436
TCONS_00071214 mRNA upstream 114332 23672254 ~ 23684659 (-) False XLOC_036437
TCONS_00071202 other downstream 431153 23122762 ~ 23122874 (-) True XLOC_036425
TCONS_00071201 other downstream 431655 23122151 ~ 23122372 (-) False XLOC_036425
TCONS_00071194 other downstream 708229 22844700 ~ 22845798 (-) True XLOC_036420
TCONS_00071192 other downstream 770805 22766456 ~ 22783222 (-) False XLOC_036419
TCONS_00071180 other downstream 1015077 22536028 ~ 22538950 (-) True XLOC_036416
TCONS_00071249 other upstream 1485279 25043201 ~ 25044808 (-) True XLOC_036463
TCONS_00071268 other upstream 2092307 25650229 ~ 25665761 (-) False XLOC_036471
TCONS_00071278 other upstream 2194203 25752125 ~ 25755298 (-) False XLOC_036475
TCONS_00071280 other upstream 2198760 25756682 ~ 25761038 (-) False XLOC_036475
TCONS_00071284 other upstream 2260700 25818622 ~ 25846188 (-) False XLOC_036477

Expression Profile

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