RNA id: TCONS_00071209


Basic Information

Item Value
RNA id TCONS_00071209
length 813
RNA type mRNA
GC content 0.54
exon number 7
gene id XLOC_036435
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 23560183 ~ 23578660 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCACAGAAGAAAAGATTAATCAGAGAACAAACCGCCAGGaaaaaagacAGCATGCTCCATCTGAAGATAAACGGCCGCTACCACAAATCCCTCCACCAAATgGTCCAGTTTCACAGCCAAGTGTAATGGCCACAGTAGACATCCAGAACCCAGATATTGTGGCATCAAGGTACCGCTCAACCTCAGTGCCGACCCCTGCACCAGCCTGCATCACCACTggcaaaaaagacaaaaaaggaaaGAAGAAAGGCCCAAAGCTCACTAAGGCAGACATCGGTGCTCCTAGTGGATTCAAACACGTCACTCATATTGGGTGGGATCCAAACTCTGGCTTTGatAAACTGTTCAACATTGCTGGTATCAGCGACGCACAGCTGGCAGATAAAGAAACATCTAAACTTATCTATGACTTCATCGAGCAGTCTGGAGGTCTAGATGCAGTAAAAGAGGAAATGAGGAAACAGGTCCCAGGAGGTCCTCGTTCTGCTCCTGCACCTCCTCCACCTCGTGGTGGGCTTTCCTCAGTCCCTGGACCAACCGGACGACCTCCACCACCATCACGCAGTCCGGGACCCCCACATCGTGGTCCACCACCCCCTGCGCCACATTGTAACCGCTCTGGacctccaccaccaccaccacctagCCAGAGTCACAAACCACCTCCTCCACCTATGGGTGCATGTGCTCCTCCTCCACCACCGCCTCCACCTCCTCCACCTTCCTCGTCCGGTAACTTCTCCAGTAGCCCCGTAAGCTCAGCTCCACCTCCTCCTCCCCcctctggtggtggtggtgggggtggAGGGAGA

Function

GO:

id name namespace
GO:1902622 regulation of neutrophil migration biological_process
GO:0048246 macrophage chemotaxis biological_process
GO:0007015 actin filament organization biological_process
GO:2000601 positive regulation of Arp2/3 complex-mediated actin nucleation biological_process
GO:0030593 neutrophil chemotaxis biological_process
GO:0030595 leukocyte chemotaxis biological_process
GO:0030048 actin filament-based movement biological_process
GO:0005884 actin filament cellular_component
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7098 Predicted to enable actin binding activity. Acts upstream of or within macrophage chemotaxis; neutrophil chemotaxis; and regulation of neutrophil migration. Predicted to be located in nucleus. Predicted to be active in actin filament. Is expressed in hematopoietic system; leukocyte; neuromast; thrombocyte; and thymus. Used to study Wiskott-Aldrich syndrome. Human ortholog(s) of this gene implicated in Wiskott-Aldrich syndrome; X-linked severe congenital neutropenia; and thrombocytopenia. Orthologous to human WAS (WASP actin nucleation promoting factor).

Ensembl:

ensembl_id ENSDART00000139084

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072455 lncRNA downstream 9549 23554027 ~ 23557922 (-) True XLOC_036434
TCONS_00071206 lncRNA downstream 177229 23387884 ~ 23390242 (-) True XLOC_036432
TCONS_00072454 lncRNA downstream 317267 23240862 ~ 23250204 (-) True XLOC_036430
TCONS_00072453 lncRNA downstream 322022 23240862 ~ 23245449 (-) False XLOC_036430
TCONS_00072042 lncRNA downstream 347515 23217498 ~ 23219956 (-) True XLOC_036428
TCONS_00071212 lncRNA upstream 8426 23581510 ~ 23583855 (-) False XLOC_036436
TCONS_00071211 lncRNA upstream 8426 23581510 ~ 23584211 (-) False XLOC_036436
TCONS_00072456 lncRNA upstream 115567 23688651 ~ 23705867 (-) False XLOC_036437
TCONS_00071223 lncRNA upstream 209539 23782623 ~ 23783597 (-) True XLOC_036440
TCONS_00072043 lncRNA upstream 619615 24192699 ~ 24215822 (-) True XLOC_036444
TCONS_00071207 mRNA downstream 151109 23415023 ~ 23416362 (-) True XLOC_036433
TCONS_00071205 mRNA downstream 239207 23252850 ~ 23328264 (-) True XLOC_036431
TCONS_00071204 mRNA downstream 327315 23227100 ~ 23240156 (-) True XLOC_036429
TCONS_00071203 mRNA downstream 373063 23190986 ~ 23194408 (-) False XLOC_036427
TCONS_00071200 mRNA downstream 485804 23044917 ~ 23081667 (-) True XLOC_036424
TCONS_00071210 mRNA upstream 6890 23579974 ~ 23612462 (-) False XLOC_036436
TCONS_00071213 mRNA upstream 8812 23581896 ~ 23599096 (-) True XLOC_036436
TCONS_00071214 mRNA upstream 99170 23672254 ~ 23684659 (-) False XLOC_036437
TCONS_00071215 mRNA upstream 99170 23672254 ~ 23702295 (-) False XLOC_036437
TCONS_00071216 mRNA upstream 116908 23689992 ~ 23701880 (-) True XLOC_036437
TCONS_00071202 other downstream 444597 23122762 ~ 23122874 (-) True XLOC_036425
TCONS_00071201 other downstream 445099 23122151 ~ 23122372 (-) False XLOC_036425
TCONS_00071194 other downstream 721673 22844700 ~ 22845798 (-) True XLOC_036420
TCONS_00071192 other downstream 784249 22766456 ~ 22783222 (-) False XLOC_036419
TCONS_00071180 other downstream 1028521 22536028 ~ 22538950 (-) True XLOC_036416
TCONS_00071249 other upstream 1470117 25043201 ~ 25044808 (-) True XLOC_036463
TCONS_00071268 other upstream 2077145 25650229 ~ 25665761 (-) False XLOC_036471
TCONS_00071278 other upstream 2179041 25752125 ~ 25755298 (-) False XLOC_036475
TCONS_00071280 other upstream 2183598 25756682 ~ 25761038 (-) False XLOC_036475
TCONS_00071284 other upstream 2245538 25818622 ~ 25846188 (-) False XLOC_036477

Expression Profile

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