RNA id: TCONS_00071215


Basic Information

Item Value
RNA id TCONS_00071215
length 5130
RNA type mRNA
GC content 0.41
exon number 12
gene id XLOC_036437
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 23672254 ~ 23705867 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCCCTAGCCTGGACCATCAGCCCAGAAACAGCCATGCACGGACCGCCAGTACTATTGAACGGCCACAAAAAAGGGAAGCAAGCGAGGTATTTCTGAATTTTGTGTACAGACACATTCAGAACCAAAGATATCATAACACAGATTCAGCCATGAATCTGAATTTGCTGTGGATTTTGCTTCTTGGGATTTATGTGCAGCAATCAGCTTCACAGATGGTGCAGTGCTTTTCAGCATTTTCCATATCCACCGGGAAGTGTGCTGATCTGTTGGGTGAGATTGAAAAAGATTTTTGTTGCATAAACCCCAGCTATGGCTTCGCTGAAGCAGACGGAGTTTGTAGGAGCTGTGGGCATGCGGCATGGAGTGAATGGTCAAGCTGGAGCCAGTGCTCAGTCAGTTGTACTGAGGGAGTTACTCAAAGGCGACGGTTTTGTTACGGAAATGGTAACTGTTCAGACCCTGAGGATTTAGGAACTATTCAAACCAAACCATGTGTGAAAAAAGACTGCTGCCCAGAGGACGGTGGCTGGTCTAAGTGGGGGAACTGGCAGCCATGTTCAGTAACGTGTGAAAATGGACAAAAAAAGAGGCAAAGAGCCTGTTCTAACCCGGCTCCAAAATGTGGAGGCTCCTGTTCTGGCGAACCGCAAGAAATTGAACCTTGTTCCGCTGACACAGTCTGTCCAACTCACGGAGGGTGGTCCACCTGGGGAAATTGGGGTCGCTGCCCAGTTACTTGTATCGAGGAAGGACGTAACACCCAAAAAGAAGTTCGTACAAGGACGTGCACCAATCCCTCACCGTCCACCGCTCCACCTGGCAGATTTTGCGAGGGTTCCGAAAAAGACACCCGCCCTTGCAGTGGACTGCCTTTTTGCCCAATCGATGGAAGCTGGGGCTCCTGGTCAGGTTCCTCAGCCTGCTCTGTGACTTGTGGAGTGGGCCGACAGATGCAGTCACGGATATGTGATTCTCCAAGCCCCAAACATGGCGGTAAACCATGTCATGGCATAGAGCAAAAATCTGGCCTTTGCAGGACTTTAGCCAAGTGTCCAATACATGGGAGGTGGACAGAATGGAGTGAGTGGAGTATTTGTAAATCGCCTTCCACTAGAAAAATCACATGCAGAACCAGGGAGGGAACCCGAAGGAAATTACGGGACTGTGTTGGTACAGAACACGAAGGAAAACTCTGCGATGGAGAAATTGTTGAACATGGCAGCTGCTTTGACATTGATAAGTGTGATATGGAAGCTATCTTGTCCGAGTGGAGCGAGTGGAGTTACTGCAAACCTGACTGTGGGCAAGACTCCAAACAAACCAGAAGCAGAAAGTGTGTTCCTGACATTTCTGAATACCAATCCGATGACTACAGTCTTTTCTATGGGAAGCCTGTCATTAATTGTGAGAAAGTGAAGGATGAAACCGAAACAAGACCATGCAAAAATGTGCCTCAGTGCTAAGACAAGTTTTTCAGGATGACTAAGCACAGAAGATGGTGAGGATAAGAGGACCAGTTGGTGTAGATGGTAAACTCTTCTGCAGGAGGAAgaaccttaaagggatagttcaccaaagaTGACaatttattcactatttactcttcttcaagtggttccaaaatgTGTTTTAGAGTTTTTCTTCTGATGCACAAGAaagataatattttgaagaaagttgaaaacgcATTCattgtaggaaaacaaataccacggaagttaaaggtgcagtaggtgatcagcCTAAATGCCATCTGTTAGCATATTATCTTCGAAAACATAATCCCTTCCCTGCCGTCCAAGGCCACGCCACCTAAATTTACAAGCGCACACATTACAGATGAgagagacccactagatcatgtcattcgccagttagaataCTTTATAGTACTTTACTATGGTAATACTACAATCCGAATAGAAAAACTGTTCTACATCTAGCATGTTTGTAATTGTGTAGctagcaaaacttgtcataatgtgctaTAGTTCATGCAGGCAAGTAGAGATATGCGCAGGACTGAATCTTTAGTCCCACTCCCACTAGGTTTTATTCCATACCTGACCGCTCCCGCTGTATGTTCAGCCTTTGTTCACCCTCTGCCCACCCTttcccgccccgttttctacccgacCAGAATGTTCCCACTAAACTTAGATCTGGTTCCCAAAATCTCATGTTACAATTGGGCACTACCAAaagagagataacagataaaagtGTGGGCTGTCCAAGTATTGttggctaaatgtcagttttgtttgcccatTTGTGATGAGACTTGAGTGCCTTGAGGTTTGTTTCTGGTGGACTCTTTCAAGGTCAGATACACAAACATATCCACTCAATATATTTGCCAATTACAGATTGTGTTTCATATATCAAATCTGGATTATTTTCAACACGCATAGCAGGTATAATTGGGACAAGGAAGAATGTTAAATGTAGAGCGATTAAATAAGCTGGAtgctacagagtccagacagcctattaTAAGCAACACACAAGAGCCCGGTGGAtgtgctcgctctctctctctcgcgctcactttctctttctctgggAATTCTATATTCTTAGATCGCCCGCTCTCGTTCAAATTAAACAAGAGTTATTGACCGAAGTTTCTAAGTTTCCGCGTCACAAGAAATCTAGTCTGGTCCCGTGGCTTCTGTGGTACagccgcaggaatgcagacctctacatgCAAAGATTGTTGCTCTCACTCTCTCAcgcgctttgtcctaaagcgactacttAGAGGTTGACCAGCAGactgcaggaattacacttatttctAAGCCATACGTACATACTTTTTCAGACCGGACATTCAGAGTAGCATGctgaacaatatagggagtgcgtcacaggttgtcattgttcaaaaatgaaccaatgcgaatataaaaccaacttcacctcagtaaagcaggctaatctacattatcgatgctgtaaaaggtcccttatgaaactgaaaatagacaCATCAATCCTttgccggaagatttcagtggctgaaaaacacttctgtgcatttatcccatttgtaaaacaacaaaatcaacaCCAGCTTCGCTtgactaaaagagttttaaaacattacattacctgtctaaaagaaatacttcagccatggtgtcatccttcctccagcgtgcaaaagtaactccaatattgattcagcatttgtttgtaCCGCTCTCTTTCTTGTGTGCAGGTGAACAGCCAAAGGCAGATCTGCATGCAGGGTTGgattcagtgttgccaactatttctaATGAAAATAGCTAAAGCATGCccgaaaagtagctaaatgttgcaATATGACGTCATAAACTGATCTGCATATCAGTAACATCATTATGTAGTACCTGACAAGCGTTAGCCCGTCATGTTTCCACTCTATGAGGCgctgtgtattatattatattaaaacattacatccaaGCACAATAAATAGGTTCTTGTTAACATTTTACTTTGCGTGATGACATCATTGTGTAATCGCAACTCAAAACTACATCTTTATGTAGTATACAATATAATGAATGTTTTGTGAAAATAGAGttgactatttgtaaaagtaatacaaacactTTTTATAAGAATGTTTCTATTTTCAAGTATAACACTGATAATGAACAgttacattcagttaaacagttacagcttgtgtacttactcttttaacttttgaaaattaactcatttggaaaagtgacaacAGTTATTGCACTATTGGAATGTTTTGCTAcctaaattaccaacaattatacatgttaacaaatctcagtaaattaacagttataAAAAACAATCTGTGCTAGCGATTTActctactgagtgaagcctgcagccactgctctgttgagtcactttttaaaaattgcttaagtagccaaattaatgttaaacattgcttaatttgTAACTAGGTGCACTTTGAAAAAAAGTTGCTAGCAATTTtgttgctaaatctagcaacaaaattgctaaaGTGGAAACACTGGCTGGATTAACATAAGGGCTAGGTGGAGCTGAAGCCGCAGGGCCCACGGGAGAAGTGGGCCCGTGATTGGCTGATGAATTCATTTACGTTATGACGTGGGAAACGCCTCTTTGAGTTATGCTTTCTCTCTTCGATAAGTATTCCTTTCGGTTCGCTGCTGATCTAAAACATCGACGCAGGTGCTAAACCGGGGCACAGAGTGACTGTAACCCAATCTGAATATTGAATTGCCCTGTTTTAGTCACCCATAAGGATGATCAGATGTGCCAATTTTCCCAGGACAGTCCCTTATTTCGCCACTACTGCGAAAACCGTCCAGTCAAAGGTAGGCTAACCAAGCTCGTCGTAGAACAAAACTCTGAATTGAAATAGTTTTCATCAATGATTGACTTGTACATGTAGTAACAGAAGCTGGGATAGGCGGAATTATACTAAAAGAACTTTCATCAGACAATATATCcgatgcaaaaaaaataaatctaataaaaatgctaGCCCCCTGCTGGCCCGTGCGCTACGACACTGTCATTACTTTGTATTGGCTACTTGCAGGCctgttttaataaaatagaaaaaatatgcaATAATCAAATACAAATCACCTTGTATCTGGTATAGCCCTAGGCCCCAATGTGTTCTTCATCTCGCCCTGACTGCATGAACAGCTGCGCTGTTGTGTGCAAATCAACATTCGTTTAGACAGTTTGGGCTATTATCAGATTTATGGGAATTACAAAGTTAAtttgaatgaacattttttagtcttatgccttacccagattataaaaaatacatataactACGTTTagactattttaatatattcataactattggaatgtgaagagaccaGGACAACAGTGttgtgtttctgaagacaatcgccTACTGCATATTTAATGGTTACTGTGTTTTTAGTTCAAAtgttatcttgttttgtgttcaactgtgATGATCGTTTTTGGTGAACTCGCCCTTTAACATGCCCGTCTGTAGAAGTATACTATCATCAGAATACTTGCTTTGTTAGATTTATATAGATTGAATTTGTTGCTGATTAAAGCACTATGTTGTGAACTCTGCTTTGCTGCCATAATAAAGCATTAATGCAA

Function

GO:

id name namespace
GO:0006955 immune response biological_process

KEGG:

id description
ko05168 Herpes simplex virus 1 infection

ZFIN:

id description
ZDB-GENE-030131-9247 Acts upstream of or within immune response. Is expressed in several structures, including cardiovascular system; digestive system; eye; gonad; and neutrophil. Human ortholog(s) of this gene implicated in X-linked properdin deficiency. Orthologous to human CFP (complement factor properdin).

Ensembl:

ensembl_id ENSDART00000162296

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00071211 lncRNA downstream 88043 23581510 ~ 23584211 (-) False XLOC_036436
TCONS_00071212 lncRNA downstream 88399 23581510 ~ 23583855 (-) False XLOC_036436
TCONS_00072455 lncRNA downstream 114332 23554027 ~ 23557922 (-) True XLOC_036434
TCONS_00071206 lncRNA downstream 282012 23387884 ~ 23390242 (-) True XLOC_036432
TCONS_00072454 lncRNA downstream 422050 23240862 ~ 23250204 (-) True XLOC_036430
TCONS_00071223 lncRNA upstream 80328 23782623 ~ 23783597 (-) True XLOC_036440
TCONS_00072043 lncRNA upstream 490404 24192699 ~ 24215822 (-) True XLOC_036444
TCONS_00072457 lncRNA upstream 595076 24297371 ~ 24297670 (-) True XLOC_036446
TCONS_00072458 lncRNA upstream 622953 24325248 ~ 24577568 (-) True XLOC_036447
TCONS_00072459 lncRNA upstream 717655 24419950 ~ 24497994 (-) True XLOC_036450
TCONS_00071210 mRNA downstream 59792 23579974 ~ 23612462 (-) False XLOC_036436
TCONS_00071213 mRNA downstream 73158 23581896 ~ 23599096 (-) True XLOC_036436
TCONS_00071208 mRNA downstream 93594 23560183 ~ 23578660 (-) False XLOC_036435
TCONS_00071209 mRNA downstream 99170 23567471 ~ 23573084 (-) True XLOC_036435
TCONS_00071207 mRNA downstream 255892 23415023 ~ 23416362 (-) True XLOC_036433
TCONS_00071217 mRNA upstream 50978 23753273 ~ 23758312 (-) False XLOC_036438
TCONS_00071218 mRNA upstream 51603 23753898 ~ 23776399 (-) False XLOC_036438
TCONS_00071219 mRNA upstream 58204 23760499 ~ 23765207 (-) True XLOC_036438
TCONS_00071220 mRNA upstream 74275 23776570 ~ 23780402 (-) False XLOC_036439
TCONS_00071221 mRNA upstream 74483 23776778 ~ 23780334 (-) True XLOC_036439
TCONS_00071202 other downstream 549380 23122762 ~ 23122874 (-) True XLOC_036425
TCONS_00071201 other downstream 549882 23122151 ~ 23122372 (-) False XLOC_036425
TCONS_00071194 other downstream 826456 22844700 ~ 22845798 (-) True XLOC_036420
TCONS_00071192 other downstream 889032 22766456 ~ 22783222 (-) False XLOC_036419
TCONS_00071180 other downstream 1133304 22536028 ~ 22538950 (-) True XLOC_036416
TCONS_00071249 other upstream 1340906 25043201 ~ 25044808 (-) True XLOC_036463
TCONS_00071268 other upstream 1947934 25650229 ~ 25665761 (-) False XLOC_036471
TCONS_00071278 other upstream 2049830 25752125 ~ 25755298 (-) False XLOC_036475
TCONS_00071280 other upstream 2054387 25756682 ~ 25761038 (-) False XLOC_036475
TCONS_00071284 other upstream 2116327 25818622 ~ 25846188 (-) False XLOC_036477