XLOC_036459 (kcnc4)


Basic Information

Item Value
gene id XLOC_036459
gene name kcnc4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 24928632 ~ 24965308 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071241
ATGATCAGCTCGGTGTGTGTTTCGTCGTACCGCGGGCGCAAGTCAGGCAACAAACCTCCTTCCAAATCATGTCTGAAGGAAGAGATGGCCAGATGCGAAGACTCGGACAAAATCATCATCAACGTCGGCGGAACGCGCCACGAAACCTACAGGAGCACCCTGAGGACCATACCGGGCTCCAGACTCGCCTGGCTCGCGGACACGGACAGCCAGGTGAACCCGGACGCAGACACCGGGCAGACGCACCCGAACAGCGAGTTCTTTTTTGACCGACACCCTGGCATATTCGCCTATGTGCTGAACTACTACAGAACTGGCAAGCTCCACTGCCCGGCGGATGTGTGCGGCCCTCTGTTCGAGGAGGAGTTGGCGTTTTGGGGCATCGACGAGACGGACGTGGAGCCCTGCTGCTGGATGACCTACCGCCAGCACAGGGACGCAGAGGAGGCGCTGGACATATTCGAGCCGCCGGATCCTGAGGACGCGGAGGATGACCAGGACATGCCCAGACGCTTTGGCATTGAGGACAGCCCCGACCGCTCCAGGGGATGCTGTGAAGTTTGGCAACCAAAAATATGGGCGCTCTTTGAAGATCCCTATTCTTCGCGTGCAGCCAGGGTAATAGCCTTCGTCTCTCTGTTTTTCATCTTGGTGTCCATCACTAACTTCTGCCTAGAGACCCACGAGGCCTTTTTTGAGTTTCACAATCACACCGATACAAAATCAGCCACCAACAGCACCACCATCATCCAGGTTATGGATACCAAACCAGTGCTCACAGTGGTGGAGGGAATCTGCGTGGTGTGGTTTACCTTTGAGTTCCTGGTCCGCATCATATGTTGCCCAAACAAGCTCCTGTTCATTAAGAACCAGCTGAACATCATAGACTTTGTTGCCATTCTGCCCTTCTATCTGGAGAGGAGTTTGATTGGAAACACCTCCAAAGCTGCCAAGGATGTCCTGGGGTTTCTGCGCGTGGTCCGTTTTGTCCGAATCTTACGGATCTTTAAGCTCACGCGACACTTTGTGGGTCTCAGGGTTCTCGGGCACACCTTGAGAGCGAGCGTCAATGAGTTTTGCTTGCTCATCATCTTTCTTGCTCTCGGGGTGCTCATCTTCGCCACCATGATCTACTACGCCGAGCGTATCAGCGCAGATCCGGACGATCCTAGTGGCTGCAACCACACGCATTTCAAGAACATTCCCATCGGCTTCTGGTGGGCAGTGGTCACCATGACGACACTTGGTTATGGGGACATGGTTCCTAAGACGTGGCTCGGCATGATAGTGGGTGCGTTATGTGCTATAGCGGGCGTGCTTACTATCGCCATGCCGGTGCCTGTTATCGTTAACAATTTTGGTATGTACTACTCGCTGGCTATGGCCAAGCAAAAGCTgcccaagaagaagaagaagcacaACCCAAACCCAGGTATGGTGTTGGACTCTGGCTCATTTGGGAAGTCTGAAAGCAACTCGCCACGGAACAGCACACAGAGCGACACATGCCCACTCGCTGCGGAGGAAAACATCACAAGAAACCGCTCAGATTCAAAGCAGAATGGCGACGCTACCGTAACTCTTTCAGAAGAGGAGGGCTGCAGTCTGACCCAACCGCTCTCTCCTGGCGAGAGGTGGACCCTCCGATGTTCACGCAACAGAGACAAGACCATGAAGGATGCAACCTGCTTTCTTCTGAATTCTGGGGACTTTTCTTGTGGAGCTGAACCCACAATCCACACAGAGAGCTGTAAAGATGCGCTCACTTCTCCAGCAAACTACACTCAAGCAGAAGTGACCACGCTGACCTGA
>TCONS_00071242
ATGATCAGCTCGGTGTGTGTTTCGTCGTACCGCGGGCGCAAGTCAGGCAACAAACCTCCTTCCAAATCATGTCTGAAGGAAGAGATGGCCAGATGCGAAGACTCGGACAAAATCATCATCAACGTCGGCGGAACGCGCCACGAAACCTACAGGAGCACCCTGAGGACCATACCGGGCTCCAGACTCGCCTGGCTCGCGGACACGGACAGCCAGGTGAACCCGGACGCAGACACCGGGCAGACGCACCCGAACAGCGAGTTCTTTTTTGACCGACACCCTGGCATATTCGCCTATGTGCTGAACTACTACAGAACTGGCAAGCTCCACTGCCCGGCGGATGTGTGCGGCCCTCTGTTCGAGGAGGAGTTGGCGTTTTGGGGCATCGACGAGACGGACGTGGAGCCCTGCTGCTGGATGACCTACCGCCAGCACAGGGACGCAGAGGAGGCGCTGGACATATTCGAGCCGCCGGATCCTGAGGACGCGGAGGATGACCAGGACATGCCCAGACGCTTTGGCATTGAGGACAGCCCCGACCGCTCCAGGGGATGCTGTGAAGTTTGGCAACCAAAAATATGGGCGCTCTTTGAAGATCCCTATTCTTCGCGTGCAGCCAGGGTAATAGCCTTCGTCTCTCTGTTTTTCATCTTGGTGTCCATCACTAACTTCTGCCTAGAGACCCACGAGGCCTTTTTTGAGTTTCACAATCACACCGATACAAAATCAGCCACCAACAGCACCACCATCATCCAGGTTATGGATACCAAACCAGTGCTCACAGTGGTGGAGGGAATCTGCGTGGTGTGGTTTACCTTTGAGTTCCTGGTCCGCATCATATGTTGCCCAAACAAGCTCCTGTTCATTAAGAACCAGCTGAACATCATAGACTTTGTTGCCATTCTGCCCTTCTATCTGGAGAGGAGTTTGATTGGAAACACCTCCAAAGCTGCCAAGGATGTCCTGGGGTTTCTGCGCGTGGTCCGTTTTGTCCGAATCTTACGGATCTTTAAGCTCACGCGACACTTTGTGGGTCTCAGGGTTCTCGGGCACACCTTGAGAGCGAGCGTCAATGAGTTTTGCTTGCTCATCATCTTTCTTGCTCTCGGGGTGCTCATCTTCGCCACCATGATCTACTACGCCGAGCGTATCAGCGCAGATCCGGACGATCCTAGTGGCTGCAACCACACGCATTTCAAGAACATTCCCATCGGCTTCTGGTGGGCAGTGGTCACCATGACGACACTTGGTTATGGGGACATGGTTCCTAAGACGTGGCTCGGCATGATAGTGGGTGCGTTATGTGCTATAGCGGGCGTGCTTACTATCGCCATGCCGGTGCCTGTTATCGTTAACAATTTTGGTATGTACTACTCGCTGGCTATGGCCAAGCAAAAGCTgcccaagaagaagaagaagcacaACCCAAACCCAGGTATGGTGTTGGACTCTGGCTCATTTGGGAAGTCTGAAAGCAACTCGCCACGGAACAGCACACAGAGCGACACATGCCCACTCGCTGCGGAGGAAAACATCACAAGAAACCGCTCAGATTCAAAGCAGAATGGCGACGCTACCGTAACTCTTTCAGAAGAGGAGGGCTGCAGTCTGACCCAACCGCTCTCTCCTGGCGAGAGGTGGACCCTCCGATGTTCACGCAACAGAGACAAGACCATGAAGGATGCAACCTGCTTTCTTCTGAATTCTGGGGACTTTTCTTGTGGAGCTGAACCCACAATCCACACAG

Function

symbol description
kcnc4 Predicted to enable delayed rectifier potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within several processes, including potassium ion transport; protein homooligomerization; and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be active in axon; dendrite membrane; and neuronal cell body membrane. Predicted to be integral component of membrane. Orthologous to several human genes including KCNC4 (potassium voltage-gated channel subfamily C member 4).

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0006813 potassium ion transport biological_process
GO:0032590 dendrite membrane cellular_component
GO:0030424 axon cellular_component
GO:0043025 neuronal cell body cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0032809 neuronal cell body membrane cellular_component
GO:0005216 ion channel activity molecular_function
GO:0005244 voltage-gated ion channel activity molecular_function
GO:0005249 voltage-gated potassium channel activity molecular_function
GO:0005251 delayed rectifier potassium channel activity molecular_function
GO:0005267 potassium channel activity molecular_function

KEGG:

id description
ko04040 Ion channels

ZFIN:

id description
ZDB-GENE-060503-773 Predicted to enable delayed rectifier potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within several processes, including potassium ion transport; protein homooligomerization; and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be active in axon; dendrite membrane; and neuronal cell body membrane. Predicted to be integral component of membrane. Orthologous to several human genes including KCNC4 (potassium voltage-gated channel subfamily C member 4).

Ensembl:

ensembl_id ENSDARG00000061288

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071241 False 1812 mRNA 0.54 4 24928632 24965308
TCONS_00071242 True 1744 mRNA 0.54 3 24938207 24965308

Neighbor

gene id symbol gene type direction distance location
XLOC_036458 NA coding downstream 19593 24856986 ~ 24909039 (-)
XLOC_036457 BX324132.3 coding downstream 125521 24799688 ~ 24803111 (-)
XLOC_036456 rbm15 coding downstream 137572 24788499 ~ 24791060 (-)
XLOC_036455 NA coding downstream 147644 24780407 ~ 24780988 (-)
XLOC_036454 prok1 coding downstream 198447 24714733 ~ 24730185 (-)
XLOC_036460 hspa1b coding upstream 2790 24968098 ~ 24970790 (-)
XLOC_036461 ahcyl1 coding upstream 6582 24971890 ~ 25011157 (-)
XLOC_036462 nfyal coding upstream 54234 25019542 ~ 25034411 (-)
XLOC_036463 sort1b coding upstream 76405 25041713 ~ 25074319 (-)
XLOC_036464 amigo1 coding upstream 152082 25117390 ~ 25120231 (-)
XLOC_036447 NA non-coding downstream 351064 24325248 ~ 24577568 (-)
XLOC_036450 NA non-coding downstream 430638 24419950 ~ 24497994 (-)
XLOC_036452 NA non-coding downstream 453537 24441528 ~ 24475095 (-)
XLOC_036468 NA non-coding upstream 429798 25395106 ~ 25396501 (-)
XLOC_036474 BX544876.1 non-coding upstream 765704 25731012 ~ 25734935 (-)
XLOC_036481 NA non-coding upstream 1153915 26119223 ~ 26326501 (-)
XLOC_036482 NA non-coding upstream 1250376 26215684 ~ 26229796 (-)
XLOC_036483 NA non-coding upstream 1363945 26329253 ~ 26368366 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000052_01929151_01946893 KCNC4 coding CI01000052 null 1929151 ~ 1947172 (+)