RNA id: TCONS_00072462


Basic Information

Item Value
RNA id TCONS_00072462
length 1862
lncRNA type antisense_over
GC content 0.39
exon number 5
gene id XLOC_036458
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 24856986 ~ 24909039 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGAGGTAAGCACGCGGATATTTTCATTACCGCGTAACGTAAAAATGCCGTTACTGTTCGCGAAAAATATACAGACCTTTTTCAGACAGTGTTACTTTACGTGCTTATAGAAAATAACTTCTACACACGAGAATCTACACaggaaaacatttaaaagacattCGGCTGGAAACGTTTGGAGCTCAGTTACCTTGGGTGTGAACATGTGAGCGATGCCGTCTACAGCTCCTTTAAGAAACAGTCCTCTCACCAGGAAGCAGAAGAGCACCACGTAAGGAAACAGAGAGCTGAAATACATCACCTGCACAAATACAGCATGACAATTACAATTGgGCTGGACGCTCCAATGCCACCAAGTCGAGGACAAACATAATTCCACACGCCGATGCTTCCTCGACGGATCCTCTGGCCGACCGCCAGCTCCAGGAAGAAGAGTGGGATGCCAATAAGGATAAGAAGAATGAAGTATGGGACAAGACCATCAAAGGACCATCACAAGCTGAGTCTGAACTTTTACACCCACTGTGAAATTTTGCAGTGTTGAAGTCCCAAACAGCTTGTCCGGGCGGCAGGCCAGTCAGTTCAACGTCATTATTATGAAGAGGATTATATTTCAGTAGGGAGCAAACTAGACCTGAAGAATGCTGCTCACCCTGTGCTCAGTCAGTCCCAATTTGCTGTGTATTAAGCACAAGGGCGCTGATCACTCATAATGCAGTGAACGTGCTCAGTCAGCTGATGCCGAGGAATTCAACAAACACAAGCAAATACGAGCCTCTCTGCTGGTGGTTACATTTTCACCATTTTAGCCatgattataatatataatgcaGATCAGATCATTTCTTTATTAGTAATAGTCCATATAGATAAATATCCTGGTGAGCCAACGGCACATTATAATGTGAAATGCACATATTTTATCTGTCCGGGTTGCTAGGCAATGGTGCTTGATGAAATTCTCACATCTCTGCTTCCTGTGAACCTGCATGCTCACTATATGAGAACAGTGAGTGGCAGCTCGTCTGTTCACTACTCcaaattttaaaatacacaagacGGATCATGAGAATCACAGTTCAAATTTAGCAAGCAGTCTCTCCATACCATATTTACTATTCAGAAAATGGCTAAAATGACATGGTGATGATGTGAACTCGATTTTGGACTGTTGCAAAGATAATCATGGGAATTATGCGGACAGACAATCTCTCATCTTTTAGAATATTTTAATTTGAAGAAGAATATGAATAGtactctttctgtctctctctctcacactctctctctctctctctctctctctctctctctgtatgtgtgtcattgtttatttttacattactgtaatttTTTCACTACGATAATTGCTTAAGTGAGCATATACTGTGAAGAAAAAATTTGCCCACACATTGccagaacaaaataaagaaaaacaaactggTGTCAGAGATTATATAAGCCTCTCTGGGTGgttgacacaaaaaaaaagacatttgggAAATTAACTAGATGTTCTTCAgtgcattttattatttgatttttagtAAAACTTAAAATGAATAGTATGCTTTCTAAAAATACTGGGTTGATTCaacccaaaacaaaaactgggttaacatttttttattaaaaacttaatCCGATGATTTAGTTTGTCCATTTTTTCTTAAATTTGCTTTAAAACAACCTACTATTCATAGTatatattactgttttatttaaagagcacctattttacccctttaacAGGATTTAAGATGCGtttttttgtgtctccagaatgtgtctgtaaagtttcagctctaaaCACCCATCacattggaattttctgctctgaacacattgtagctgtttttgtt

Function

GO:

id name namespace
GO:0008988 rRNA (adenine-N6-)-methyltransferase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072461 lncRNA downstream 75998 24780407 ~ 24780988 (-) True XLOC_036455
TCONS_00072458 lncRNA downstream 279418 24325248 ~ 24577568 (-) True XLOC_036447
TCONS_00072459 lncRNA downstream 358992 24419950 ~ 24497994 (-) True XLOC_036450
TCONS_00072460 lncRNA downstream 381891 24441528 ~ 24475095 (-) True XLOC_036452
TCONS_00072457 lncRNA downstream 559316 24297371 ~ 24297670 (-) True XLOC_036446
TCONS_00071252 lncRNA upstream 317277 25226316 ~ 25228033 (-) False XLOC_036465
TCONS_00071256 lncRNA upstream 402123 25311162 ~ 25316104 (-) False XLOC_036466
TCONS_00071259 lncRNA upstream 421364 25330403 ~ 25336150 (-) False XLOC_036466
TCONS_00071260 lncRNA upstream 421514 25330553 ~ 25336173 (-) True XLOC_036466
TCONS_00072465 lncRNA upstream 486067 25395106 ~ 25396501 (-) True XLOC_036468
TCONS_00071239 mRNA downstream 53875 24799688 ~ 24803111 (-) True XLOC_036457
TCONS_00071238 mRNA downstream 65926 24788499 ~ 24791060 (-) True XLOC_036456
TCONS_00071237 mRNA downstream 126801 24714733 ~ 24730185 (-) True XLOC_036454
TCONS_00071236 mRNA downstream 159400 24500116 ~ 24697586 (-) True XLOC_036453
TCONS_00071235 mRNA downstream 353989 24422393 ~ 24502997 (-) False XLOC_036451
TCONS_00071241 mRNA upstream 19593 24928632 ~ 24965308 (-) False XLOC_036459
TCONS_00071242 mRNA upstream 29168 24938207 ~ 24965308 (-) True XLOC_036459
TCONS_00071243 mRNA upstream 59059 24968098 ~ 24970790 (-) True XLOC_036460
TCONS_00071244 mRNA upstream 62851 24971890 ~ 25011157 (-) False XLOC_036461
TCONS_00071245 mRNA upstream 63940 24972979 ~ 25002182 (-) True XLOC_036461
TCONS_00071202 other downstream 1734112 23122762 ~ 23122874 (-) True XLOC_036425
TCONS_00071201 other downstream 1734614 23122151 ~ 23122372 (-) False XLOC_036425
TCONS_00071194 other downstream 2011188 22844700 ~ 22845798 (-) True XLOC_036420
TCONS_00071192 other downstream 2073764 22766456 ~ 22783222 (-) False XLOC_036419
TCONS_00071180 other downstream 2318036 22536028 ~ 22538950 (-) True XLOC_036416
TCONS_00071249 other upstream 134162 25043201 ~ 25044808 (-) True XLOC_036463
TCONS_00071268 other upstream 741190 25650229 ~ 25665761 (-) False XLOC_036471
TCONS_00071278 other upstream 843086 25752125 ~ 25755298 (-) False XLOC_036475
TCONS_00071280 other upstream 847643 25756682 ~ 25761038 (-) False XLOC_036475
TCONS_00071284 other upstream 909583 25818622 ~ 25846188 (-) False XLOC_036477

Expression Profile

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