RNA id: TCONS_00071252


Basic Information

Item Value
RNA id TCONS_00071252
length 630
lncRNA type retained_intron
GC content 0.40
exon number 2
gene id XLOC_036465
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 25225590 ~ 25247284 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATTGTGCTTTTCCTCAACAAGAAAGATCTCTTCCAGGAGAAGATTAAGAAGGTCCACCTGAGCATCTGCTTCCCTGACTATGATGGTCCAAACACATATGAAGATGCAAGCAACTACATCAAGACTCAATTTCAAGACCTGAACATGAAGAAGGGAGTGAAGGAGATCTACTCACACATGACCTGTGCCACGGACACAAAGAACGTCGAGATTGTGTTTAACGCCGTGACAGACATTATCATCAAAGAAAACCTTAAGGACTGCGGTCTGTTCTAAACACCATCCACTTTTTCAAAGGTATGTGCTCTAGCAAATATAAAGCAGATTCTTATGGTTAACCTCGAACTTTATATGTGATGTTCAAACAAAGTTGCAAGCCCTTTAATGGCAAAACATGAGGGAGTGATCCCAGATGAATAGCTACTCAAGCAACCtcattttgcatttaattatcaATGCATTGTTCCCACACCTAGATTGTTGTCTGttctattaatttataaataatcttCTGCATTTTGTTTCCAGATCTTTCAGCCCCATCCCCACCTAAATGATTGGATTTACTCTGGTGAAGCTGCCACAGTAATAAAAGAACATCCACAGGTGGCATGAAAGTGAACTCTACA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007188 adenylate cyclase-modulating G protein-coupled receptor signaling pathway biological_process
GO:0050908 detection of light stimulus involved in visual perception biological_process
GO:0001580 detection of chemical stimulus involved in sensory perception of bitter taste biological_process
GO:0007165 signal transduction biological_process
GO:0001750 photoreceptor outer segment cellular_component
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0001917 photoreceptor inner segment cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0019001 guanyl nucleotide binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0031683 G-protein beta/gamma-subunit complex binding molecular_function
GO:0001664 G protein-coupled receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-011128-10 Predicted to enable G protein-coupled receptor binding activity; G-protein beta/gamma-subunit complex binding activity; and GTPase activity. Acts upstream of or within detection of light stimulus involved in visual perception. Predicted to be part of heterotrimeric G-protein complex. Predicted to be active in photoreceptor inner segment and photoreceptor outer segment. Is expressed in pineal complex and visual system. Used to study achromatopsia and cone-rod dystrophy. Human ortholog(s) of this gene implicated in achromatopsia 4 and color blindness. Orthologous to several human genes including GNAT2 (G protein subunit alpha transducin 2).

Ensembl:

ensembl_id ENSDART00000146338

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072462 lncRNA downstream 317277 24856986 ~ 24909039 (-) False XLOC_036458
TCONS_00072464 lncRNA downstream 317277 24865681 ~ 24909039 (-) True XLOC_036458
TCONS_00071240 lncRNA downstream 317373 24865681 ~ 24908943 (-) False XLOC_036458
TCONS_00072463 lncRNA downstream 346106 24865681 ~ 24880210 (-) False XLOC_036458
TCONS_00072461 lncRNA downstream 445328 24780407 ~ 24780988 (-) True XLOC_036455
TCONS_00071256 lncRNA upstream 83129 25311162 ~ 25316104 (-) False XLOC_036466
TCONS_00071259 lncRNA upstream 102370 25330403 ~ 25336150 (-) False XLOC_036466
TCONS_00071260 lncRNA upstream 102520 25330553 ~ 25336173 (-) True XLOC_036466
TCONS_00072465 lncRNA upstream 167073 25395106 ~ 25396501 (-) True XLOC_036468
TCONS_00071276 lncRNA upstream 502979 25731012 ~ 25734935 (-) True XLOC_036474
TCONS_00071250 mRNA downstream 106085 25117390 ~ 25120231 (-) True XLOC_036464
TCONS_00071248 mRNA downstream 151997 25041713 ~ 25074319 (-) False XLOC_036463
TCONS_00071246 mRNA downstream 191905 25019542 ~ 25034411 (-) False XLOC_036462
TCONS_00071247 mRNA downstream 192635 25022374 ~ 25033681 (-) True XLOC_036462
TCONS_00071244 mRNA downstream 215159 24971890 ~ 25011157 (-) False XLOC_036461
TCONS_00071253 mRNA upstream 626 25228659 ~ 25247284 (-) True XLOC_036465
TCONS_00071254 mRNA upstream 79970 25308003 ~ 25327809 (-) False XLOC_036466
TCONS_00071255 mRNA upstream 82778 25310811 ~ 25329967 (-) False XLOC_036466
TCONS_00071257 mRNA upstream 100999 25329032 ~ 25336589 (-) False XLOC_036466
TCONS_00071258 mRNA upstream 101460 25329493 ~ 25338709 (-) False XLOC_036466
TCONS_00071249 other downstream 181508 25043201 ~ 25044808 (-) True XLOC_036463
TCONS_00071202 other downstream 2103442 23122762 ~ 23122874 (-) True XLOC_036425
TCONS_00071201 other downstream 2103944 23122151 ~ 23122372 (-) False XLOC_036425
TCONS_00071194 other downstream 2380518 22844700 ~ 22845798 (-) True XLOC_036420
TCONS_00071192 other downstream 2443094 22766456 ~ 22783222 (-) False XLOC_036419
TCONS_00071268 other upstream 422196 25650229 ~ 25665761 (-) False XLOC_036471
TCONS_00071278 other upstream 524092 25752125 ~ 25755298 (-) False XLOC_036475
TCONS_00071280 other upstream 528649 25756682 ~ 25761038 (-) False XLOC_036475
TCONS_00071284 other upstream 590589 25818622 ~ 25846188 (-) False XLOC_036477
TCONS_00071296 other upstream 1474184 26702217 ~ 26707359 (-) False XLOC_036487

Expression Profile

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