RNA id: TCONS_00071250


Basic Information

Item Value
RNA id TCONS_00071250
length 1366
RNA type mRNA
GC content 0.48
exon number 2
gene id XLOC_036464
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 25117390 ~ 25120231 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agagGTGTGTGCGCTGCGGCGGGCGCTTATTTACACCCGTTCAGTCACACTGCTGCTAGAGAAAAGCTCGGGCGCTCCTTAGGACATGGACTTTCTAAAGGGATTCATGTGTCTCTGCGCTGATACATCTCAAGCTCTGCGTTTGCCTCATAAGTCCCACAAGCTGTTTCTCCAAACAGTGTGGAAAGGATTTAAACAGCTTCACTACTGAACAAGGAGTTTATGACTTGTGCTACAACCACATTTTAACTGCGTGTCAGAAATGCCCCCTTCCATTAATTGGTGCATTAGGTGGGCTGTCTGCTTGTCCTGTATTCTTGCACTGATCCCCAAGATCAGAGGGTCGACGCTGAATTGTCACAAAATGTGCATATGCGCCAGCAACATTGTCAGCTGTTCTAAGATGAACCTGACGATGATCCCGTCTGACCTGCCGAACTACACAGCCGTGCTTGACATTAGTTTTAATGAGATAACCGGACTACGCGCACAATGGACCAAGCACAAACTGCCCAATCTCCACAATCTCTTACTCAGTCACAATGGTTTGTCATTCATCTCTTCCGAGGCGTTCATATTCGTAAAGCAACTGCGCTACTTGGATCTTTCATCAAATGTTTTGCGACAGCTGGACGAGTTCATTTTCGAGCCACTGATACATTTGGAGGTTCTTCTGCTCTACAACAACCACATCTCGCAGATAGACCGCACAGCCTTCTTGGGCCTCGGTAGCCTGCAGAAGCTCTACCTGAGCCAGAACTTGGTATCTCGCTTCCCTTTGGAGCTCGTCAAGGACAAGAACCGACTGGACAAGCTGAGCCTGTTGGACTTGTCTTCCAATCGGATCAAAGTTCTCCCCATTCAAGACCTGCAGGCGCTTCCGGCCTACATCAAGAATGGACTTTACTTCCATAACAACACCCTCATCTGCGACTGCGAGTTGTACAGTTTGATGGCACATTGGAACATCAGGCGACTCAATTCGGCTTTGGACTTTAAGGACGACCATACCTGTGTTCACCCTGGACCGGATAAACGGGTACTGCGTTTGTACGAACTCAACATTCATATGAACTGCAGTACGTTTAAAGAAACAGACAGAGAGGCTTATTTGGAGCAGACGCTCATCCTTGACTGTGATACCCGACATCGGGAGATGTCAAAGACTTGGATGTTACCTGGAAATGTAGTGGTTTCTCCTGGCAATAACCTGAGCGCTGTGGTTCTCCCAGACGGTGATCTTGAATTAAAAACAATACGACCTGAGGACTCGGGTGTGTACACTTGCTTCGCCGTGAGTGAATACCTCAACGAAACACTCTATGTAGTGGTCAAAGTCCACAATTTTACCCTCAACGGCAATGGC

Function

GO:

id name namespace
GO:0042552 myelination biological_process
GO:0007413 axonal fasciculation biological_process
GO:0007420 brain development biological_process
GO:0007155 cell adhesion biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-114 Acts upstream of or within brain development. Predicted to be integral component of plasma membrane. Predicted to be integral component of membrane. Is expressed in basal plate midbrain region and nervous system. Orthologous to human AMIGO1 (adhesion molecule with Ig like domain 1).

Ensembl:

ensembl_id ENSDART00000147308

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072462 lncRNA downstream 208351 24856986 ~ 24909039 (-) False XLOC_036458
TCONS_00072464 lncRNA downstream 208351 24865681 ~ 24909039 (-) True XLOC_036458
TCONS_00071240 lncRNA downstream 208447 24865681 ~ 24908943 (-) False XLOC_036458
TCONS_00072463 lncRNA downstream 237180 24865681 ~ 24880210 (-) False XLOC_036458
TCONS_00072461 lncRNA downstream 336402 24780407 ~ 24780988 (-) True XLOC_036455
TCONS_00071252 lncRNA upstream 106085 25226316 ~ 25228033 (-) False XLOC_036465
TCONS_00071256 lncRNA upstream 190931 25311162 ~ 25316104 (-) False XLOC_036466
TCONS_00071259 lncRNA upstream 210172 25330403 ~ 25336150 (-) False XLOC_036466
TCONS_00071260 lncRNA upstream 210322 25330553 ~ 25336173 (-) True XLOC_036466
TCONS_00072465 lncRNA upstream 274875 25395106 ~ 25396501 (-) True XLOC_036468
TCONS_00071248 mRNA downstream 43071 25041713 ~ 25074319 (-) False XLOC_036463
TCONS_00071246 mRNA downstream 82979 25019542 ~ 25034411 (-) False XLOC_036462
TCONS_00071247 mRNA downstream 83709 25022374 ~ 25033681 (-) True XLOC_036462
TCONS_00071244 mRNA downstream 106233 24971890 ~ 25011157 (-) False XLOC_036461
TCONS_00071245 mRNA downstream 115208 24972979 ~ 25002182 (-) True XLOC_036461
TCONS_00071251 mRNA upstream 105359 25225590 ~ 25235676 (-) False XLOC_036465
TCONS_00071253 mRNA upstream 108428 25228659 ~ 25247284 (-) True XLOC_036465
TCONS_00071254 mRNA upstream 187772 25308003 ~ 25327809 (-) False XLOC_036466
TCONS_00071255 mRNA upstream 190580 25310811 ~ 25329967 (-) False XLOC_036466
TCONS_00071257 mRNA upstream 208801 25329032 ~ 25336589 (-) False XLOC_036466
TCONS_00071249 other downstream 72582 25043201 ~ 25044808 (-) True XLOC_036463
TCONS_00071202 other downstream 1994516 23122762 ~ 23122874 (-) True XLOC_036425
TCONS_00071201 other downstream 1995018 23122151 ~ 23122372 (-) False XLOC_036425
TCONS_00071194 other downstream 2271592 22844700 ~ 22845798 (-) True XLOC_036420
TCONS_00071192 other downstream 2334168 22766456 ~ 22783222 (-) False XLOC_036419
TCONS_00071268 other upstream 529998 25650229 ~ 25665761 (-) False XLOC_036471
TCONS_00071278 other upstream 631894 25752125 ~ 25755298 (-) False XLOC_036475
TCONS_00071280 other upstream 636451 25756682 ~ 25761038 (-) False XLOC_036475
TCONS_00071284 other upstream 698391 25818622 ~ 25846188 (-) False XLOC_036477
TCONS_00071296 other upstream 1581986 26702217 ~ 26707359 (-) False XLOC_036487

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000052_01842187_01843668.mRNA True 2997 mRNA 0.42 1 CI01000052 1841329 ~ 1844325 (+)