RNA id: TCONS_00072465


Basic Information

Item Value
RNA id TCONS_00072465
length 1396
lncRNA type intronic
GC content 0.31
exon number 1
gene id XLOC_036468
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 25395106 ~ 25396501 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACATGTGGATTTTCATCCTTTTGTTTACTGTGACTTACTCGGTAAGTGCACctttattttgctcattttacACAAAATACACATTTGTGATTCCACATAGGCTAACTGGATGCTGATATTGTAACTTTTTTACATCTATTTTAGTGCTAAATCTGTCAATGTGCAAACTGCATCTGCATTGAGTGGAACTGGATTTCTGACACAGATATTTCCTGATTACACGGTAAGTCAGAATATGATATATAAAAATGATATAGGCTATAAGCTTATCTACAAAGTCAGTTTTTAAACATATGTAGCAACAAAGTAGTATTGATTTATGTAGCATGATGAAAAGATTGTCATCTCATTGCTAATTTTAGCTTTAGCTTTTAATAGCTACCTAATATGGCTTCAATGTAGgctttgataaaacatttatttccctAATGCTGTGTTTGCAAATTTTACTGTAGTTGGTTTGTATTGTAATGCTACTTTGTCGAGTACAATTGGCTAATCACCACGATAAACTGTTTTATATGTCCATTTCAGTGCTGAACCTGTGAACATGCTAACTGCATCATAGAGTGGAGCTGGATTTCTGATACAGATATTGATTACTGATTACAAGGTGAGTTTAATGAAACATGATAACAtggtaaagttattattatttgctatgTGGTATTATTGTCCTAATAACTGaacatacaattaaaaaatgttaCGCATACATTATGGTTGTTAATTTTGTCTCTTTCCTCATCATTGTAATTCTTGTCTTAGGCATCTTCTACTGTACCTGATGTAGAAAAGACCCTTGAACTACCTGCAATTCCTTGACTGATACTTTTTGGTATGTTTAGAACTGTATTTTATTACTTAAGCAACTAAGGGTGTTTTCTCTGTATTTTAGCAAACATGGTAAATTcttttgaacaaaacaaaatacacaaatacataaattaaatgttcTGCCATATTTTATCCAAGCTTTCATTCACCTTTGGTGAATTTTACTAAATTTACTAAATTACTCCATTTTAGTTGTTTAACACTTAGTTGTTTAACACGCTATGTTGAtcataaatattaagttaaataaatcacaaacatTGCAGTGACAATTTCACAATAcacagtatatactgtacatgttgaTTTCACTGTACATGGTGAGTCCACAATCAACATTTTCAAATGCATGTATTGTGTTAAAAGAACAGGGCTTTGAGACCAAGTAAAATTACTTCTGCTTCCCTCACATATATTTTCAACTAGgctataaaaaataacatttcatgCGACTgctgacattgtttttttcttttaattgttttaggaGAAAAACCAGGAAGCTACATTCATAAATGGATGATCATTTTTGAGGGGCAAATAATCTGTAAAAGCATCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00071260 lncRNA downstream 58933 25330553 ~ 25336173 (-) True XLOC_036466
TCONS_00071259 lncRNA downstream 58956 25330403 ~ 25336150 (-) False XLOC_036466
TCONS_00071256 lncRNA downstream 79002 25311162 ~ 25316104 (-) False XLOC_036466
TCONS_00071252 lncRNA downstream 167073 25226316 ~ 25228033 (-) False XLOC_036465
TCONS_00072464 lncRNA downstream 486067 24865681 ~ 24909039 (-) True XLOC_036458
TCONS_00071276 lncRNA upstream 334511 25731012 ~ 25734935 (-) True XLOC_036474
TCONS_00071281 lncRNA upstream 374670 25771171 ~ 25805226 (-) False XLOC_036475
TCONS_00072466 lncRNA upstream 374670 25771171 ~ 25811172 (-) False XLOC_036475
TCONS_00072044 lncRNA upstream 408754 25805255 ~ 25811172 (-) True XLOC_036475
TCONS_00072467 lncRNA upstream 722722 26119223 ~ 26326501 (-) True XLOC_036481
TCONS_00071258 mRNA downstream 56397 25329493 ~ 25338709 (-) False XLOC_036466
TCONS_00071257 mRNA downstream 58517 25329032 ~ 25336589 (-) False XLOC_036466
TCONS_00071255 mRNA downstream 65139 25310811 ~ 25329967 (-) False XLOC_036466
TCONS_00071254 mRNA downstream 67297 25308003 ~ 25327809 (-) False XLOC_036466
TCONS_00071253 mRNA downstream 147822 25228659 ~ 25247284 (-) True XLOC_036465
TCONS_00071262 mRNA upstream 632 25397133 ~ 25422186 (-) True XLOC_036467
TCONS_00071263 mRNA upstream 26632 25423133 ~ 25566373 (-) False XLOC_036469
TCONS_00071264 mRNA upstream 27560 25424061 ~ 25566347 (-) False XLOC_036469
TCONS_00071265 mRNA upstream 117640 25514141 ~ 25569920 (-) True XLOC_036469
TCONS_00071266 mRNA upstream 194340 25590841 ~ 25605537 (-) False XLOC_036470
TCONS_00071249 other downstream 350298 25043201 ~ 25044808 (-) True XLOC_036463
TCONS_00071202 other downstream 2272232 23122762 ~ 23122874 (-) True XLOC_036425
TCONS_00071201 other downstream 2272734 23122151 ~ 23122372 (-) False XLOC_036425
TCONS_00071194 other downstream 2549308 22844700 ~ 22845798 (-) True XLOC_036420
TCONS_00071192 other downstream 2611884 22766456 ~ 22783222 (-) False XLOC_036419
TCONS_00071268 other upstream 253728 25650229 ~ 25665761 (-) False XLOC_036471
TCONS_00071278 other upstream 355624 25752125 ~ 25755298 (-) False XLOC_036475
TCONS_00071280 other upstream 360181 25756682 ~ 25761038 (-) False XLOC_036475
TCONS_00071284 other upstream 422121 25818622 ~ 25846188 (-) False XLOC_036477
TCONS_00071296 other upstream 1305716 26702217 ~ 26707359 (-) False XLOC_036487

Expression Profile

//