RNA id: TCONS_00071281


Basic Information

Item Value
RNA id TCONS_00071281
length 561
lncRNA type antisense
GC content 0.48
exon number 3
gene id XLOC_036475
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 25750963 ~ 25811172 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTCTGGTGCCGCTTCCTCCTCGATGCTGCGCAAACCGGCCTACATAACAAGAAACTGACTTGTTCTGAGGGCCGAAGATGAAGAAGGAGCTGGCTTCAGGCATGGGCACCACAGTCTCTTTTAACTGCAGGTCAGCCATGGGTCTGGGTCTGGGGCTGATCGGGATCTCTGGTTCCTCTTCTTCATCATCACCTGAGCGGAAGAGAAGGAATACAGCTTGGTCAAAGGACTTTGGCATACACAGATTTAGTTCAACGCTCTCTTTCTACGCTAACAGGCCATATCAACCTAATTCTGCATATGCCTCCTGAGATTTTCTCCCTGCTCCTGTTTCATGGCTTAGAATCTGAGGAATGGACGGCCCACCAATGCAAGTCACTGTAAACCCCGGGCAGTCAATAAGTGAGTGAGGCTCAGATTTGTGCCATGTGAAATGTAATAACGCCCTATGTTCTGAGACGAGAGAATATGACTACATACGCTAGTGGAAAGAGTGTTTGACCTACATACCACCAATGAAGCTTGAGTCATGATATAAGCTTGCGTAAAGAGGATTGGGC

Function

GO:

id name namespace
GO:0002244 hematopoietic progenitor cell differentiation biological_process
GO:0006325 chromatin organization biological_process
GO:0034968 histone lysine methylation biological_process
GO:0032259 methylation biological_process
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0016740 transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0046974 histone methyltransferase activity (H3-K9 specific) molecular_function
GO:0018024 histone-lysine N-methyltransferase activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000163196

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00071276 lncRNA downstream 36236 25731012 ~ 25734935 (-) True XLOC_036474
TCONS_00072465 lncRNA downstream 374670 25395106 ~ 25396501 (-) True XLOC_036468
TCONS_00071260 lncRNA downstream 434998 25330553 ~ 25336173 (-) True XLOC_036466
TCONS_00071259 lncRNA downstream 435021 25330403 ~ 25336150 (-) False XLOC_036466
TCONS_00071256 lncRNA downstream 455067 25311162 ~ 25316104 (-) False XLOC_036466
TCONS_00072044 lncRNA upstream 29 25805255 ~ 25811172 (-) True XLOC_036475
TCONS_00072467 lncRNA upstream 313997 26119223 ~ 26326501 (-) True XLOC_036481
TCONS_00071289 lncRNA upstream 410458 26215684 ~ 26229796 (-) True XLOC_036482
TCONS_00072468 lncRNA upstream 524027 26329253 ~ 26330646 (-) False XLOC_036483
TCONS_00071290 lncRNA upstream 524027 26329253 ~ 26368366 (-) True XLOC_036483
TCONS_00071277 mRNA downstream 9627 25750963 ~ 25761544 (-) False XLOC_036475
TCONS_00071273 mRNA downstream 41628 25716308 ~ 25729543 (-) False XLOC_036473
TCONS_00071275 mRNA downstream 41629 25716321 ~ 25729542 (-) True XLOC_036473
TCONS_00071274 mRNA downstream 42543 25716310 ~ 25728628 (-) False XLOC_036473
TCONS_00071272 mRNA downstream 55097 25708067 ~ 25716074 (-) True XLOC_036472
TCONS_00071282 mRNA upstream 6666 25811892 ~ 25814263 (-) False XLOC_036476
TCONS_00071283 mRNA upstream 6666 25811892 ~ 25817106 (-) True XLOC_036476
TCONS_00071285 mRNA upstream 15992 25821218 ~ 25846188 (-) True XLOC_036477
TCONS_00071286 mRNA upstream 52998 25858224 ~ 25874426 (-) True XLOC_036478
TCONS_00071287 mRNA upstream 167925 25973151 ~ 25980694 (-) True XLOC_036479
TCONS_00071280 other downstream 10133 25756682 ~ 25761038 (-) False XLOC_036475
TCONS_00071278 other downstream 15873 25752125 ~ 25755298 (-) False XLOC_036475
TCONS_00071268 other downstream 105410 25650229 ~ 25665761 (-) False XLOC_036471
TCONS_00071249 other downstream 726363 25043201 ~ 25044808 (-) True XLOC_036463
TCONS_00071202 other downstream 2648297 23122762 ~ 23122874 (-) True XLOC_036425
TCONS_00071284 other upstream 13396 25818622 ~ 25846188 (-) False XLOC_036477
TCONS_00071296 other upstream 896991 26702217 ~ 26707359 (-) False XLOC_036487
TCONS_00071308 other upstream 1398100 27203326 ~ 27206090 (-) False XLOC_036495
TCONS_00071309 other upstream 1398105 27203331 ~ 27206934 (-) False XLOC_036495
TCONS_00071310 other upstream 1398147 27203373 ~ 27205479 (-) False XLOC_036495

Expression Profile

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