RNA id: TCONS_00071273


Basic Information

Item Value
RNA id TCONS_00071273
length 1784
RNA type mRNA
GC content 0.42
exon number 14
gene id XLOC_036473
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 25716308 ~ 25729543 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCATGCATCCGACACTTGCACAACAGATGCACCACAAACCCCGTTGCTGAGGAAAGAAAAGCTAAAGAACATATAGAGTGACAGTCTCAAGGAAAAGGGCGACAGACAAAGAAAGGTGTGGGAGGTATGCTTCTTAATGCTACTGGAACACACAGAGGGGATGATAACAGGAGTAGTCACCAACATCTGTACCAAGATGAAGACTGTGCCACCTTTTCCATCATACAGATGAAGTCCAGAATAAGCAATTCTCTTCTGACCTCACCAAAACCAATGGCTACCAAGATATCTGTTGCCTTGGAGAGTGACCTCAGAGGCCTCGGCTCATCTCGCAATCAGAATTTCACTCTACAAAAGCAGAGTGCCAGTGGAAGTACAACCAAATACTTTAAACAACACAGACCATCAGTGCTACGTAAAGGCAACCAGCCTTTTCCACAAGCATGCAGTGCTCATGATTGGGTTGTGGACACCGTGTGTAAGACAGAACCTGACAGTGAACCATCAGATGCCATCCCTCTTTACACTGGCCAGTCTGAAAGCAGAATCGGTGCTTATGCGTCAAGCCCTCAGCCTGGCAGCCCGGAGTATACTGGGAAGCATCCATATAGTCTTTCAGGTGACTATCTGTGTGTTAAAGGACAATGCAGATGGCCAGGGTGCTCAAAGAGCGAAGATGTATTCACAGAATATGGACATTTCTTAAGGCACCTTTCTACTGACCATGCTCCTGGAGACAGAAGCATAGGCCAGCTGAGGATGCAGAAAGACAGAGTACAGCACATGGAGAATCAGTTGACTGCAGAAAGACAAAAACTGCAGGCTATGCAGCTACACTTGCTTGATGTGAAATCTACCTCTGAGGGTGGCAACATTGTGGAAAAGCCGGCACATCTGTCAGGACTTCTGCAACCTGCATCATCAAATGATCACTATGACTGTGAGAGAGCAGCAACTGAAGCGCTAACACAAGGATACTGGCAGATCTCTACCTCACAAGTTATACCAGGGATTATCCCCAGCTTTGAGTATTATAAGTTCACAAACATGAGGCCACCTTTCACCTACGCCTCCATGATACGATGGGCAATCCTGAAGTCCCCAGAAAAGCAGCTTACACTGAAAGAAATTTATCAGTGGTTTACCAGCATGTTCTTCTACTTCCGTCACAACACTGCTACATGGAAGAATGCGGTTCGACATAACCTCAGCCTTCATAAGTGCTTTGTGCGTGTTGAAGGAAGGAAAGGTTCAGTTTGGACTGTGGATGAAGAGGAATTTCTTAGAAGAAAAGGTCAAAAGTTACACAGGGATCATGATATGGACTGGATGGCACCATTTCAGCTGTTTCCTTTGACTCCACAAGGTGAATCTTACCAGATGTGAGGCCCCAAAATGGCCTCTGACTTACATTAATACAACTAATGTTATTAGCTACATTAAAAACACGATCGATGTAAACGACACCATTTACATAAATGTGCAGTCTAAATATACATAAATGCTGGCAGTCTATGTGAGAAATCAGTTGTTGTTTAGTTTGAATGTTTTGTGTCACAAATATTGTAAGAATGTATATTATTTACCAAAGTAAAAGTTTGTAATTGTTATAATCTTTCatagatttaaataaaattaatttaatcaaaaatgataATGCTTAATGATATCGTTAAGTGTGTAAATACATTCAATAAGATAAATGAATGTTGATGATATGtccttaaacattttattttacatcgtATTTTTACTAATTGTCCAAATAAAGCAATCCAATCAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0042129 regulation of T cell proliferation biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061116-2 Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within regulation of T cell proliferation. Predicted to be active in nucleus. Is expressed in digestive system; gill; immune system; and integument. Human ortholog(s) of this gene implicated in Human papillomavirus infectious disease; colorectal cancer; immune dysregulation-polyendocrinopathy-enteropathy-X-linked syndrome; pulmonary tuberculosis; and type 1 diabetes mellitus. Orthologous to human FOXP3 (forkhead box P3).

Ensembl:

ensembl_id ENSDART00000085779

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072465 lncRNA downstream 319807 25395106 ~ 25396501 (-) True XLOC_036468
TCONS_00071260 lncRNA downstream 380135 25330553 ~ 25336173 (-) True XLOC_036466
TCONS_00071259 lncRNA downstream 380158 25330403 ~ 25336150 (-) False XLOC_036466
TCONS_00071256 lncRNA downstream 400204 25311162 ~ 25316104 (-) False XLOC_036466
TCONS_00071252 lncRNA downstream 488275 25226316 ~ 25228033 (-) False XLOC_036465
TCONS_00071276 lncRNA upstream 1469 25731012 ~ 25734935 (-) True XLOC_036474
TCONS_00071281 lncRNA upstream 41628 25771171 ~ 25805226 (-) False XLOC_036475
TCONS_00072466 lncRNA upstream 41628 25771171 ~ 25811172 (-) False XLOC_036475
TCONS_00072044 lncRNA upstream 75712 25805255 ~ 25811172 (-) True XLOC_036475
TCONS_00072467 lncRNA upstream 389680 26119223 ~ 26326501 (-) True XLOC_036481
TCONS_00071272 mRNA downstream 234 25708067 ~ 25716074 (-) True XLOC_036472
TCONS_00071271 mRNA downstream 8887 25650326 ~ 25707421 (-) True XLOC_036471
TCONS_00071270 mRNA downstream 19029 25650326 ~ 25697279 (-) False XLOC_036471
TCONS_00071269 mRNA downstream 25342 25650299 ~ 25690966 (-) False XLOC_036471
TCONS_00071266 mRNA downstream 110771 25590841 ~ 25605537 (-) False XLOC_036470
TCONS_00071277 mRNA upstream 21420 25750963 ~ 25761544 (-) False XLOC_036475
TCONS_00071279 mRNA upstream 22925 25752468 ~ 25771474 (-) False XLOC_036475
TCONS_00071282 mRNA upstream 82349 25811892 ~ 25814263 (-) False XLOC_036476
TCONS_00071283 mRNA upstream 82349 25811892 ~ 25817106 (-) True XLOC_036476
TCONS_00071285 mRNA upstream 91675 25821218 ~ 25846188 (-) True XLOC_036477
TCONS_00071268 other downstream 50547 25650229 ~ 25665761 (-) False XLOC_036471
TCONS_00071249 other downstream 671500 25043201 ~ 25044808 (-) True XLOC_036463
TCONS_00071202 other downstream 2593434 23122762 ~ 23122874 (-) True XLOC_036425
TCONS_00071201 other downstream 2593936 23122151 ~ 23122372 (-) False XLOC_036425
TCONS_00071194 other downstream 2870510 22844700 ~ 22845798 (-) True XLOC_036420
TCONS_00071278 other upstream 22582 25752125 ~ 25755298 (-) False XLOC_036475
TCONS_00071280 other upstream 27139 25756682 ~ 25761038 (-) False XLOC_036475
TCONS_00071284 other upstream 89079 25818622 ~ 25846188 (-) False XLOC_036477
TCONS_00071296 other upstream 972674 26702217 ~ 26707359 (-) False XLOC_036487
TCONS_00071308 other upstream 1473783 27203326 ~ 27206090 (-) False XLOC_036495