RNA id: TU253725


Basic Information

Item Value
RNA id TU253725
length 220
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G223690
representative True

Chromosome Information

Item Value
chromosome id CI01000052
NCBI id null
chromosome length 3494004
location 1967143 ~ 1967362 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAATCGTCCGACATCGTTGTTTTACCTTTTTTGTAAAGGGCGTTTGGCTTAATCTTTGCACGTTCGCTTTGTAAACACTGGATCGGTACTTCCATCTACGTCACACATGACCTTTGTAATGTGATTACGTCATGCGTGGCAGATCGCAGAGCTAGTGCAAGACGAGCATTTGTGGATAAAAAGTATATCTTTTTTTTTCTTTCTTTTTTTTGAAAATGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253698 lncRNA upstream 138427 1828401 ~ 1828716 (+) True G223663
TU253679 lncRNA upstream 196959 1769954 ~ 1770184 (+) True G223644
TU253678 lncRNA upstream 197284 1769541 ~ 1769859 (+) True G223643
TU253670 lncRNA upstream 228673 1738234 ~ 1738470 (+) True G223635
TU253665 lncRNA upstream 253770 1713072 ~ 1713373 (+) True G223630
TU253726 lncRNA downstream 13091 1980453 ~ 1999545 (+) False G223691
TU253727 lncRNA downstream 13091 1980453 ~ 1981039 (+) False G223691
TU253728 lncRNA downstream 19069 1986431 ~ 1992412 (+) True G223691
TU253765 lncRNA downstream 32304 1999666 ~ 1999908 (+) True G223714
TU253769 lncRNA downstream 36065 2003427 ~ 2003679 (+) True G223718
CI01000052_01929151_01946893.mRNA mRNA upstream 19971 1929151 ~ 1947172 (+) True CI01000052_01929151_01946893
CI01000052_01925657_01927599.mRNA mRNA upstream 39362 1925657 ~ 1927781 (+) True CI01000052_01925657_01927599
CI01000052_01896445_01921839.mRNA mRNA upstream 45174 1894819 ~ 1921969 (+) True CI01000052_01896445_01921839
CI01000052_01887034_01894583.mRNA mRNA upstream 72560 1886982 ~ 1894583 (+) True CI01000052_01887034_01894583
CI01000052_01863516_01880476.mRNA mRNA upstream 86161 1863138 ~ 1880982 (+) True CI01000052_01863516_01880476
CI01000052_02030095_02036209.mRNA mRNA downstream 62507 2029869 ~ 2036635 (+) True CI01000052_02030095_02036209
CI01000052_02040372_02042933.mRNA mRNA downstream 73010 2040372 ~ 2043241 (+) True CI01000052_02040372_02042933
CI01000052_02077422_02080093.mRNA mRNA downstream 110060 2077422 ~ 2080335 (+) True CI01000052_02077422_02080093
CI01000052_02120654_02122805.mRNA mRNA downstream 152998 2120360 ~ 2123260 (+) True CI01000052_02120654_02122805
CI01000052_02167466_02172193.mRNA mRNA downstream 199222 2166584 ~ 2173036 (+) True CI01000052_02167466_02172193
TU253572 other upstream 696216 1270492 ~ 1270927 (+) True G223545
TU253739 other downstream 81964 2049326 ~ 2104299 (+) False G223694
TU253734 other downstream 131178 2098540 ~ 2104299 (+) False G223694
TU255127 other downstream 1463774 3431136 ~ 3460136 (+) True G224953

Expression Profile