CI01000053_00678066_00685960 (DYRK1A)


Basic Information

Item Value
gene id CI01000053_00678066_00685960
gene name DYRK1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 677932 ~ 687806 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000053_00678066_00685960.mRNA
ATTTGTTTTCTTTTTACACTCCATGGACAATCCCATATCCCTTTTTTTTCCCAATTTGTTTTAATTGTTTTTGAGTTGTAGTGGTGCTGAAATCCAGCTAATCTGCTGGAGTGTCATTTGAGGTCTTCTGTTTGATTAGCTGTGTGGAAATTTAATAGAATTTAGATTAATTATATGTTACTTTAACATTTAATGGGAGAATTGGAAGGGAGTTTTTACTTTTTGAACACCTTCAAGTATGCTTGGTTAAATTAGGCAAAGTTTAGTAAAAGTTGTGAAAACTTAGGCTTACTGGTAGAAGTAGGAATTTATTGTTAGCCAAGTTTAAAAAAAACAAAGTACATGTGCGGACAACATGCCCAGTATTGTTGGCTTTTTATTGAGATGTTTGTTCTGTTTTTTAAAAATTTTATTTGCAGCCCTTATATCCTTGCATTACTCTAAGGAAACTATTAAATGTGTTGGATGAGTTAGTTAACACTTTTTGCAAGTGAATCAAACTTTTTAATACTCTTAAATATTAAATTAAATAATACTGGAAATAATGCATCCAGGTCAACAGTTTAATCTTGATTTGAAGCAGAAAATATTGAGCAATTATGCACCTCTTACTCAATTCATCTCTGTGGTATAAGTTGTCAATTTCAGTATTCATATGTCACAGTGTAAAATGGTGGTTAAAGTTGACTATTGCATGGCTACATTAAGTCACTTTAGTTTGATGTGGAAGATCTAGTAGTAAGCAAAAACCAAGTAGTTGGCTGCTTTTTCTCTTTGTGGCTTAGTCAAAACTTGGGAGAAGTTTGTCTTTGTTTGCTATAGTTTTTTGTTCATGTGCTCCATGCCAAATATTAAGAGTAATAATTTCTGGAACATGTAGCACATTTTAGGTTTGCAATTTGAGAAGATGTCAGTGGCAATCATGAAAGCCATTAAAGTACAGGGAGCTGGCCTGCTATTACACTATAAGTAAGGGCCAGTTATGTTGTTACATAGCTTTATTATAGATTGGAAAATGTTTGATGGAAAGCCATAATTGTTCTAGGTTCTTTTTGCATGTGCATTCAACATGTTTGGCATTGTTGAGAGAAGGTAACTTAAAGATCACTTCCCCCCCACTGTACAATAGTCAAAGGAATTTGTCGCATGTTAGATGATGTTTACCTGGCCTAACCTTAACCGGGCATGTCATAGAATAAAATGACTTAAAAATGATGAATTAAATTAGTTTTACATTAGAAGTCAAAAGCTCGTGAGAATGATTTTATTTATTACTAATTAATTAATTAATTACAAAGCGTATCACTAGTTTTCGTCAATTGTTAAAAAACAAATTAAACTTGATTAGTCCTACTTAATTTTTTTTTTTTTTTTTTTTACTTTCATTGACATTCCATCCCTTAAAACAATATAATCACAGATCAGTAAACAGAGAACACTTAAGTAAATATACTATAAACATTATTTTTTATTTTTTATTTTTTTTTTATAGTTTAATCAGATTCAGAAATATAAATGTCCATCTGAGTAGTACACATGTAAAATTTGAGTGACATGCGGAATAGTGAAATGCACTGCTGAGGGTCATCTTAAACGTTTATATTTGCAAAGGCTTGTTGACAATTTGTACGCTACCAACTTTACAATTTTAATACAGGCCTATAGATCCTTACAAAAAATGTTGCATTTATTCTTTGAGTTATAAAGGCAGCTTATACATCACACAGAAACAGCACTAGATATACACTTAGAGGGACTTCGATGGTGCAGAATGTAATGTTGTTTCTGTTTGTACATTGACATACATCAGTTTTCTCTTGTTGAATTGCATGCAGTCCTTGATAACATGAATCATCAAGCCTATATTGAGAAATGGGGAGAGACCTCAGCATGCAAACCCTCGTCTGTCCGGCTTGCACCCTCTCTTTCTTTCCATGCTGCTGGTCTTCAGATGGCTGCTCCCATGCCTCATTCGCACCAGCAGTACAGTGACTGTCACCAGCAGAGTACAGACCAGTCTGTCACTGTACTGCCATACAGTGATCAGACACAAGCACTCACTGCCAGCCAGAGGCACATGCCCCAGTGCTTTCGTGACCCCACTTTAGCTCCTTTGAGGAAGCTCTCCATAGACCTGATCAAAACCTACAAACACATCAATGAGGTGTATTATGCAAAAAAGAAACGACGGCATCAACAGGGTCAAGGTGAGGACTCCAGCCACAAGAAAGAAAGAAAAGTCTTTAATGATGACTATGATGATGAGAACTACGATTACATCGTCAAGAATGGGGAAAAATGGATGGACCGCTATGAAATTGACTCTTTAATTGGAAAAGGGTCATTTGGACAGGTTGTAAAAGCTTATGATCGAGCTGAGCAAGAGTGGGTAGCAATTAAGATCATCAAGAACAAGAAGGCCTTTCTGAATCAAGCTCAAATTGAAGTACGGCTTCTCGAGCTCATGAACAAACATGACACAGAGATGAAATACTATATAGTACACTTGAAACGGCACTTCATGTTCCGGAATCATCTTTGCTTAGTATTTGAAATGTTGTCATACAACTTATATGACTTGTTACGAAATACGAACTTCAGAGGTGTTTCTTTGAATCTGACACGGAAGTTTGCCCAGCAGTTGTGTACAGCACTTCTGTTTCTTGCTACACCTGAGCTCAGCATCATCCACTGTGACCTAAAGCCAGAGAACATCCTGCTATGTAACCCCAAGAGAAGTGCCATCAAAATAGTGGACTTTGGGAGCTCCTGCCAACTGGGACAAAGGATATATCAGTACATCCAGAGTCGATTCTACCGCTCCCCTGAAGTGTTATTGGGAATGCCATATGACCTGGCCATAGACATGTGGTCTCTGGGATGTATTCTGGTGGAAATGCATACAGGAGAACCTCTCTTTAGTGGAGCAAATGAGTACAAACCTCCGGCATCTCGAAAGCTCCATGCCATCTTGGGAGTGGAATGTGGTGGACCAGGCGGTCGTCGGGCGGGAGAATCCGGCCACGCAGTAGCTGACTACTTGAAGTTCAAGGACCTCATTCTCAGAATGCTAGACTATGACCCCAAGACGCGAATTCAGCCCTACTATGCCCTCCAGCACAGTTTCTTCAAGAAGACGACGGATGAAGGAACCAATACAAGCAGTAGTGTGTCAACAAGTCCTGCGCTTGAGCAGTCGCAGTCATCAGGGACCACTTCTAGTACATCCTCAAGCTCAGGAGGATCATCTGGAACAAGCACCAGTGGCAGAGCAAGATCCGATCCAACTCACCACCATCGGCACAGCGGCGGGCATTTTGGCACAGCCATGCCAGCCATAGACTGTGACAACCTTTGCCCTCAGGCGAGACAGCCTTATCATCCCCCAGTAGTATGGCCTGGAATCGTAGGACCAGAACCTGTCACTGTAGAGACTCATCCAGTCCAGGAAACCACTTTTCATGTGCCTCCCCAGCATCCCAAGGCATTGCACCCCCATCACCATCATCACCATCACGGACAGGTCATAGCAACGCGACCACGGCCGCGACTCTACAACTCGCCCACCAACAGCGCCTCCACCCAGGATTCCATGGAGGTGGTGCACGGTCATCTGTCCATGACATCCCTGTCTTCCTCTGCATCCTCTTCCTCCACATCTTCCTCTTCCACAGGAAACCAAGGCAACCAGGCTTACCAGCTCCGCCAGCTTCCTGCCAACACCCTGGACTTTAGCCAAAATGGAAGTATGAGTATGGGTTTGGGTGCCTTCTCAAATCCTCGCCAAGAGACTGGTATGGCTGGACATCCCACGTACCCTGTTGCCACAAACACAGGACCTGGTCACTTTATAGCAGAGGGACACCTGGGCATGAGACAAGGCATTGATAGGGAAGATTCTCCAATGACTGGAGTCTGTGTTCAGCAGAGCTCAATGGCCAGCTCATGACTTTAGCTGAAATGGGTTTGTTTTTCTGTGTGAATTTTGTTTTTTATTTTTTGTTTTGTTTTTGTTTTTTTTCTTCCTTTTTATGGTGGTGTTTTCATTTTCTCCTGTTTTTCAAAAGGTGCATAGAGAATAAA

Function

symbol description
dyrk1a Enables cytoskeletal protein binding activity; identical protein binding activity; and protein kinase activity. Involved in amyloid-beta formation; positive regulation of RNA splicing; and protein phosphorylation. Acts upstream of or within peptidyl-tyrosine phosphorylation. Located in cytoplasm and nucleus. Colocalizes with actin filament; microtubule; and neurofilament. Implicated in autism spectrum disorder; autosomal dominant non-syndromic intellectual disability 7; and intellectual disability. Biomarker of Down syndrome.

GO: NA

KEGG:

id description
K08825 DYRK1; dual specificity tyrosine-phosphorylation-regulated kinase 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000053_00678066_00685960.mRNA True 4083 mRNA 0.41 10 677932 687806

Neighbor

gene id symbol gene type direction distance location
CI01000053_00667421_00672829 THAP12, PRKRIRB coding downstream 3511 667075 ~ 674421 (-)
CI01000053_00656235_00664346 MAP6B coding downstream 13586 655451 ~ 664346 (-)
CI01000053_00647818_00652652 NA coding downstream 25213 647708 ~ 652719 (-)
CI01000053_00629840_00639156 NA coding downstream 38761 629713 ~ 639171 (-)
CI01000053_00496924_00507195 NA coding downstream 170737 496723 ~ 507195 (-)
CI01000053_00696659_00703507 NA coding upstream 8556 696362 ~ 703507 (-)
CI01000053_00733357_00737206 NA coding upstream 45509 733315 ~ 737327 (-)
CI01000053_00739813_00746803 NA coding upstream 51856 739662 ~ 747031 (-)
CI01000053_00797990_00802827 NA coding upstream 109901 797707 ~ 803060 (-)
CI01000053_00815725_00817893 LIM2.1, LIM2.3 coding upstream 127791 815597 ~ 817893 (-)
G225622 NA non-coding downstream 106675 571056 ~ 571257 (-)
G225620 NA non-coding downstream 121873 552476 ~ 556059 (-)
G225570 NA non-coding downstream 150402 526117 ~ 527530 (-)
G225571 NA non-coding downstream 151987 524494 ~ 525945 (-)
G225606 NA non-coding downstream 184643 493053 ~ 493289 (-)
G225665 NA non-coding upstream 59575 747381 ~ 747619 (-)
G225668 NA non-coding upstream 61445 749251 ~ 749495 (-)
G225563 NA non-coding upstream 120361 808167 ~ 809734 (-)
G225561 NA non-coding upstream 125822 813628 ~ 814240 (-)
G225678 NA non-coding upstream 128598 816404 ~ 816668 (-)
G225574 NA other downstream 131064 543647 ~ 546868 (-)
G225812 NA other upstream 771789 1459595 ~ 1466732 (-)
CI01000053_02225226_02226481 YPELD, YPEL2B, YPEL1, YPELC, YPEL2 other upstream 1529642 2225210 ~ 2226481 (-)
G226826 NA other upstream 1878086 2565892 ~ 2567072 (-)
G226963 NA other upstream 2308911 2996717 ~ 2997268 (-)
CI01000053_03551506_03551965 NA other upstream 2862527 3550333 ~ 3552847 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location