CI01000053_00739813_00746803


Basic Information

Item Value
gene id CI01000053_00739813_00746803
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 739662 ~ 747031 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000053_00739813_00746803.mRNA
AATGTCAAAAATGGGCAGTTTATGATTGTATCTTCATCTAGTGCATCAGCGAGTGTTTATGGTTGAGTTAAGTGCAAGGAAACCGGGAGGCCAGAGTGACAATAACAGCACACTCGCTATCAACCCTGATGGACTGACAGAGAGAATAGGCCCTTTAGTCACTTCAGCCGCCGATGAAAACATAATTCCTTCCTTCAGTCCCACACTGAGTTCAGACATTATTGAGCGATGACAGAGGCAGATCAAGCCATGAGGAGACGAGTGGGAAATCGTGTTGAAATGGAGTGGATATGTGTTCCTCTTCTGCTTTTCAGTGGGATTCATTTAGCTTTTACACAATTCAATGGATTTAACTGTGATCCAAACTACCACAGCAGATTCCCTGTTGACAGGGATATCAGTGTATACTGTGGTGTTCAGACAGTCACACTAAAGATTAACCTCTGTCCTGTGTTGTACTCTGGATACACTGATGCCGACCTGGCACTGAACGGCCGCCATGGAGATGTCCATTGCCGAGGCTTCATAAACAACAACACCTTCCCCACAGCTGTGCTCTTCAGTATCAGCCTGAGCACACTGGAGGCCTGTGGGAACACGCTGGTGATGGGGAATATATCGGGCTACATTGACACCCCAGACCCTCCAACAGTCATCAGTTACCTGCCAGGTCTGGTGTATAAATTCAGCTGTAGTTATCCTCTGGAGTACCTGCTTAACAACAGCCAGCTGGCATCCTCATCTGCTGCAATATCAGTGAAAGAAAACAATGGCACCTTCCTGAGCACACTCAGTTTGGTGCTTTACAATGATTCAACATTCAGTCAGTTGATCTCTATACCAATGTCTGGCCTGTCCTTGAAGACTCGTGTGTTTGCTGCAGTTAAAGCTACAAATCTGGACAGGAGGTGGAATGTTCTGATGGATCACTGTTACGCCACCCCCTCTGGGAATCCTAATGATGAGATACGCTATGACCTTTTCTTTGGGTGCTACAAGGATCCACAGACAACTGTTTTTGAGAACGGAAAAAGTCAAATGGGACGCTTTGCATTTGAAGTCTTCCGTTTTGTGAAACATAAGAACCAGAAGATGTCCACTGTCTTTCTGCATTGTGTCACAAAGCTGTGTCGAGCAGATGACTGTGCAATACTAATGCCGATCTGTGCAAATCGCAGGAGGAGAGACACTGTGGATGAACATGTAGTATCAGGTTCATCCTCAGGGGATGCCGTCATAACCGCAGGTCCCATAATCACTAGGAGCGATGAATCTCCAACCAACAACTCGCAACTTGTGAGCAGTTCCTCCCAGCATCTGAATGCTGTAACCAGTGCCTTGATATCGGGTGTGGTTGTGCTGGGTGTGACGAGCCTGGGCCTCTTCATCCTCTCCCTCAGGCTGCTCAGGAAGCCCAGCCCTTCTAGTCTGACAGGGGTCTGGAACCCCAGCTTCAGATGACCTTCATTCTTGGACCATGAGTGCACTGAAATCTAACAATAATATTTGGTCATATAATTGCATTTTACTCAGATCCTCAGTGCTGCTTACTTATGTCACAAAATTGTCATTGGGCTGCTTTGTCAAAAACGTTTCCCCATTTGATAATAAA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000053_00739813_00746803.mRNA True 1612 mRNA 0.46 11 739662 747031

Neighbor

gene id symbol gene type direction distance location
CI01000053_00733357_00737206 NA coding downstream 2335 733315 ~ 737327 (-)
CI01000053_00696659_00703507 NA coding downstream 36155 696362 ~ 703507 (-)
CI01000053_00678066_00685960 DYRK1A coding downstream 51856 677932 ~ 687806 (-)
CI01000053_00667421_00672829 THAP12, PRKRIRB coding downstream 65241 667075 ~ 674421 (-)
CI01000053_00656235_00664346 MAP6B coding downstream 75316 655451 ~ 664346 (-)
CI01000053_00797990_00802827 NA coding upstream 50676 797707 ~ 803060 (-)
CI01000053_00815725_00817893 LIM2.1, LIM2.3 coding upstream 68566 815597 ~ 817893 (-)
CI01000053_00830433_00864331 NA coding upstream 83167 830198 ~ 864373 (-)
CI01000053_00865420_00881846 ROBO3, ROBO2 coding upstream 118342 865373 ~ 881846 (-)
CI01000053_00956174_00961278 ACAD8 coding upstream 208978 956009 ~ 961278 (-)
G225622 NA non-coding downstream 168405 571056 ~ 571257 (-)
G225620 NA non-coding downstream 183603 552476 ~ 556059 (-)
G225570 NA non-coding downstream 212132 526117 ~ 527530 (-)
G225571 NA non-coding downstream 213717 524494 ~ 525945 (-)
G225606 NA non-coding downstream 246373 493053 ~ 493289 (-)
G225665 NA non-coding upstream 350 747381 ~ 747619 (-)
G225668 NA non-coding upstream 2220 749251 ~ 749495 (-)
G225563 NA non-coding upstream 61136 808167 ~ 809734 (-)
G225561 NA non-coding upstream 66597 813628 ~ 814240 (-)
G225678 NA non-coding upstream 69373 816404 ~ 816668 (-)
G225574 NA other downstream 192794 543647 ~ 546868 (-)
G225812 NA other upstream 712564 1459595 ~ 1466732 (-)
CI01000053_02225226_02226481 YPELD, YPEL2B, YPEL1, YPELC, YPEL2 other upstream 1470417 2225210 ~ 2226481 (-)
G226826 NA other upstream 1818861 2565892 ~ 2567072 (-)
G226963 NA other upstream 2249686 2996717 ~ 2997268 (-)
CI01000053_03551506_03551965 NA other upstream 2803302 3550333 ~ 3552847 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_008437 zpld1b coding NC_007126.7 CM002899.2 19783352 ~ 19793361 (+)