XLOC_008437 (zpld1b)


Basic Information

Item Value
gene id XLOC_008437
gene name zpld1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 19783352 ~ 19793361 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016887
aTGTGTTCTCTGTTTCCAGCTGTTGAGATGGAGTGGATGTGTGTTATTCTTGTGCTTTTCAAGGGGATTCATTTAGCTTTTTCACAATTCAATGGATTCAACTGTGATCCCAACTACCACAGCAGATTTCCTGGTGAGAGAGACATCAGCATCTACTGTGGTGTTCAGACGATAACACTGAAGATCAACCTCTGTCCTGTGTTGTACTCTGGATACACTGATGTTGACCTGGCACTGAACAGCCGTCATGGAGAACCGCAGTGCAGAGGCTTCATAAACAACAACACCTTTCCCACAGCGGTGCTCTTCAGCATTAGCCTGAGCTCACTGGAGGCCTGTGGGAACACACTGCAGGTTTCTACAACTCAAGGCATCAATGCGTATGGGAACATCTCTATGGTCCAAATGGGAAATATTTCGGGCTACATCGACACTCCAGACCCACCAACTGTTATCAGCTACCTGCCAGGACTGGTGTATAAGTTCAGCTGTAGTTATCCTCTGGAGTACCTGCTCAACAACAGCCAGCTGGCATCCTCATCTGCTGCAATAACAGTTAAAGACAATAATGGCACGTTCCTGAGCACTCTCAGCTTGGTGCTTTACAATGACTCAACCTTTAATCAGCTGATCTCTATACCAGTGTCTGGACTGTCCTTAAAGACTCGTGTGTTTGCTGCCGTTAAAGCTACGAATCTAGATAGGAGGTGGAACGTCCTGATGGATCACTGTTACGCCACCCCCTCTGGGAACCCAAAAGATGAGATTCGCTATGACCTTTTCTTTGGGTGCTACAAGGATCCACAGACCACTGTTTTTGAGAACGGGAAAAGTCAGATGGGTCGTTTTGCGTTTGAAGTCTTTCGTTTTGTGAAACATAAGAACCAGAAGATGTCCACTGTGTTTCTGCATTGTATCACAAAGCTGTGTCGGGCAGATGACTGTGCAATACTTATGCCGATCTGTGGAAAACGCAGGAGGAGAGACAGTGAGGCTGAGCATACAGTGTCAGGTTCTTCCTCAGGGGACGCCGTCATAACCGCCGGCCCCATAATCACCAGGAGTGGTAAGAGCCTCCATATTCAGCTTTATAGTCGGTTAAGTCCTCTGAATGCGGTCACCAGTGCACTGATTTCGGGTGTGGTTGTGCTGGGTGTGATGAGCCTGGGCCTCTTCATCCTCTCCCTCAGGCTGCTCAGGAAGCCCAGCCCGTCTAATCTGACCGGGCTCTGGAACCCCAGCTCCAGATGA
>TCONS_00016888
GTTGAGATGGAGTGGATGTGTGTTATTCTTGTGCTTTTCAAGGGGATTCATTTAGCTTTTTCACAATTCAATGGATTCAACTGTGATCCCAACTACCACAGCAGATTTCCTGGTGAGAGAGACATCAGCATCTACTGTGGTGTTCAGACGATAACACTGAAGATCAACCTCTGTCCTGTGTTGTACTCTGGATACACTGATGTTGACCTGGCACTGAACAGCCGTCATGGAGAACCGCAGTGCAGAGGCTTCATAAACAACAACACCTTTCCCACAGCGGTGCTCTTCAGCATTAGCCTGAGCTCACTGGAGGCCTGTGGGAACACACTGCAGGTTTCTACAACTCAAGGCATCAATGCGTATGGGAACATCTCTATGGTCCAAATGGGAAATATTTCGGGCTACATCGACACTCCAGACCCACCAACTGTTATCAGCTACCTGCCAGGACTGGTGTATAAGTTCAGCTGTAGTTATCCTCTGGAGTACCTGCTCAACAACAGCCAGCTGGCATCCTCATCTGCTGCAATAACAGTTAAAGACAATAATGGCACGTTCCTGAGCACTCTCAGCTTGGTGCTTTACAATGACTCAACCTTTAATCAGCTGATCTCTATACCAGTGTCTGGACTGTCCTTAAAGACTCGTGTGTTTGCTGCCGTTAAAGCTACGAATCTAGATAGGAGGTGGAACGTCCTGATGGATCACTGTTACGCCACCCCCTCTGGGAACCCAAAAGATGAGATTCGCTATGACCTTTTCTTTGGGTGCTACAAGGATCCACAGACCACTGTTTTTGAGAACGGGAAAAGTCAGATGGGTCGTTTTGCGTTTGAAGTCTTTCGTTTTGTGAAACATAAGAACCAGAAGATGTCCACTGTGTTTCTGCATTGTATCACAAAGCTGTGTCGGGCAGATGACTGTGCAATACTTATGCCGATCTGTGGAAAACGCAGGAGGAGAGACAGTGAGGCTGAGCATACAGTGTCAGGTTCTTCCTCAGGGGACGCCGTCATAACCGCCGGCCCCATAATCACCAGGAGTGACGAATCTCCAACCAACAACTCACAACTCGTGAGCAGCTCGTCCCAGCCTCTGAATGCGGTCACCAGTGCACTGATTTCGGGTGTGGTTGTGCTGGGTGTGATGAGCCTGGGCCTCTTCATCCTCTCCCTCAGGCTGCTCAGGAAGCCCAGCCCGTCTAATCTGACCGGGCTCTGGAACCCCAGCTCCAGATGA

Function

symbol description
zpld1b Predicted to be an extracellular matrix structural constituent. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface and extracellular space. Orthologous to human ZPLD1 (zona pellucida like domain containing 1).

GO:

id name namespace
GO:0005615 extracellular space cellular_component
GO:0009986 cell surface cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-121214-104 Predicted to be an extracellular matrix structural constituent. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface and extracellular space. Orthologous to human ZPLD1 (zona pellucida like domain containing 1).

Ensembl:

ensembl_id ENSDARG00000063372

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016887 False 1251 mRNA 0.49 9 19783352 19793361
TCONS_00016888 True 1239 mRNA 0.49 10 19783373 19793361

Neighbor

gene id symbol gene type direction distance location
XLOC_008436 NA coding upstream 27534 19752881 ~ 19755818 (+)
XLOC_008435 CR626889.1 coding upstream 61598 19688875 ~ 19721754 (+)
XLOC_008434 si:dkey-4p15.5 coding upstream 94963 19681718 ~ 19688389 (+)
XLOC_008433 lim2.3 coding upstream 122595 19646902 ~ 19660757 (+)
XLOC_008432 zgc:77784 coding upstream 181023 19456112 ~ 19602329 (+)
XLOC_008438 si:ch211-229d2.5 coding downstream 4557 19797918 ~ 19803478 (+)
XLOC_008439 alcamb coding downstream 45097 19838458 ~ 19878987 (+)
XLOC_008440 dyrk1ab coding downstream 90881 19884242 ~ 19896816 (+)
XLOC_008441 thap12b coding downstream 106836 19900197 ~ 19908909 (+)
XLOC_008442 map6b coding downstream 121984 19915345 ~ 19926759 (+)
XLOC_008463 BX663520.1 misc downstream 1458830 21252191 ~ 21252282 (+)
XLOC_008428 BX324206.3 non-coding upstream 491975 19287632 ~ 19291377 (+)
XLOC_008427 BX324206.2 non-coding upstream 497209 19284842 ~ 19286143 (+)
XLOC_008426 NA non-coding upstream 595518 19182848 ~ 19187834 (+)
XLOC_008449 NA non-coding downstream 617931 20411292 ~ 20458876 (+)
XLOC_008454 CR848784.1 non-coding downstream 1103742 20897103 ~ 20901355 (+)
XLOC_008455 NA non-coding downstream 1211372 21004733 ~ 21093616 (+)
XLOC_008456 NA non-coding downstream 1224288 21017649 ~ 21037778 (+)
XLOC_008457 NA non-coding downstream 1370674 21164035 ~ 21164573 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000053_00739813_00746803 NA coding CI01000053 null 739662 ~ 747031 (-)