XLOC_008435 (CR626889.1)


Basic Information

Item Value
gene id XLOC_008435
gene name CR626889.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 19688875 ~ 19721754 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016884
CAGAAAGATAAAACGGAAtccatttataaaattaaatctaagaaaatattttgtgtgtGCTTACAAGAAAGCAAAAAGAACTAAGGTATGGACTCATTAGGCTTCCGTACTAAACACCTGCGAGTCGCAACAGAAAATCACGCAGGTGTGTGAAGATGCAAGAAAACTAGTTTCTGAAGGAGACGTATAGATACAGTGACGATTCAGATGAAGACCCTAACACTGGACTGCACCTGTGCCCATGCCGAGTCTCAGGCCTCCGAGTGAGTGACTGGCTAGACGATCCCGGTCCCAAACGGAATGAGGGCACTGATTTGCTGAGTTTCTTCATGTGCTCTGGATCTGCGGTGGAGAAGGAAGTCTGGAGATGTGTGCTAGAGGCTTAAATAAGAAAACAAGAGGGATTCATGTGCAAATCTGTTGCCAGATTACCAGAataatgtcttaaaatgtaactaaagCAGCATATAAACATATGAGACATATGAACATATGAACATATTCAGTTTGAGACTTGCCATCATAGTTGTCATGCATGTAGTCGTCTGTTTGCTTTAGTTTTTGGTCTTGTCCTTAGGGAAGAGAATACAATGACAACACATGGGGAAAGTAGGACAGATGCTTTTGTCACCTGAACTCTCCATGGACCAAAACAATAAGGTGCTTTACTCTCGAAGAACCATTGTGATGAACATGCCATAGGCCACATCACACAGCAATAGCAGCACTTGGTTAGATGTTGCCAGATAAGTGTATTA
>TCONS_00018923
CAGAAAGATAAAACGGAAtccatttataaaattaaatctaagaaaatattttgtgtgtGCTTACAAGAAAGCAAAAAGAACTAAGGTATGGACTCATTAGGCTTCCGTACTAAACACCTGCGAGTCGCAACAGAAAATCACGCAGGTGTGTGAAGATGCAAGAAAACTAGTTTCTGAAGGAGACGTATAGATACAGTGACGATTCAGATGAAGACCCTAACACTGGACTGCACCTGTGCCCATGCCGAGTCTCAGGCCTCCGAGTGAGTGACTGGCTAGACGATCCCGGTCCCAAACGGAATGAGGGCACTGATTTGCTGAGTTTCTTCATGTGCTCTGGATCTGCGGTGGAGAAGGAAGTCTGGAGATGTGTGCTAGAGGCTTAAATAAGAAAACAAGAGGGATTCATGTGCAAATCTGTTGCCAGATTACCAGAataatgtcttaaaatGGAAGAGAATACAATGACAACACATGGGGAAAGTAGGACAGATGCTTTTGTCACCTGAACTCTCCATGGACCAAAACAATAAGGTGCTTTACTCTCGAAGAACCATTGTGATGAACATGCCATAGGCCACATCACACAGCAATAGCAGCACTTGGTTAGATGTTGCCAGATAAGTGTATTAGCCATGCCAGTGTTTGTTGGACTGTTTACTGTTTGAATATGCTAAGTTGGCAGTTGTCAGGTTCTATAATTACTGAAAAGTAGGGCTAAacaatattaaagaaaaatgCGATAAGCGATAGCATGCTAAATAATGTGATATTCGATATGCAATACGATATTTTAAAAGCTGGTATGTTTTATAGTATTTCAGGTTGGAGAAAAACCATCACTACAACTGTTGGTTAAAAGAAACCAATGATTTTAACATTGTAAACAAacgaaataaattaaatgaatatcaCCACTACAACCTTTCAAACAACATTTCAAACAGAGTAGAGTCACATGTCTTATTGTTTGCTAGGTCTTGAAA
>TCONS_00018924
AACACCTGCGAGTCGCAACAGAAAATCACGCAGGTGTGTGAAGATGCAAGAAAACTAGTTTCTGAAGGAGACGTATAGATACAGTGACGATTCAGATGAAGACCCTAACACTGGACTGCACCTGTGCCCATGCCGAGTCTCAGGCCTCCGAGTGAGTGACTGGCTAGACGATCCCGGTCCCAAACGTCCTCCATGACAAGCTCCATCACATCACTGAATAGGACCACTGAAGCTCTGCTATACACCGCTTTTAATAAAGCTGTGTATACGATGCAGAAG
>TCONS_00018771
CAGATGAAGACCCTAACACTGGACTGCACCTGTGCCCATGCCGAGTCTCAGGCCTCCGAGTGAGTGACTGGCTAGACGATCCCGGTCCCAAACGGAATGAGGGCACTGATTTGCTGAGTTTCTTCATGTGCTCTGGATCTGCGGTGGAGAAGGAAGTCTGGAGATGTGTGCTAGAGGCTTAAATAAGAAAACAAGAGGGATTCATGTGCAAATCTGTTGCCAGATTACCAGAataatgtcttaaaatgtaactaaagCAGCATATAAACATATGAGACATATGAACATATGAACATATTCAGTTTGAGACTTGCCATCATAGTTGTCATGCATGTAGTCGTCTGTTTGCTTTAGTTTTTGGTCTTGTCCTTAGGGAAGAGAATACAATGACAACACATGGGGAAAGTAGGACAGATGCTTTTGTCACCTGAACTCTCCATGGACCAAAACAATAAGGTGCTTTACTCTCGAAGAACCATTGTGATGAACATGCCATAGGCCACATCACACAGCAATAGCAGCACTTGGTTAGATGTTGCCAGATAAGTGTATTA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000096521

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016884 False 758 lncRNA 0.42 3 19688875 19708496
TCONS_00018923 False 986 lncRNA 0.39 4 19688875 19708850
TCONS_00018924 False 279 lncRNA 0.49 3 19688987 19721754
TCONS_00018771 True 554 lncRNA 0.44 2 19700416 19708496

Neighbor

gene id symbol gene type direction distance location
XLOC_008434 si:dkey-4p15.5 coding upstream 486 19681718 ~ 19688389 (+)
XLOC_008433 lim2.3 coding upstream 28118 19646902 ~ 19660757 (+)
XLOC_008432 zgc:77784 coding upstream 86546 19456112 ~ 19602329 (+)
XLOC_008431 acad8 coding upstream 340492 19335646 ~ 19348383 (+)
XLOC_008430 vps26b coding upstream 357797 19324697 ~ 19331078 (+)
XLOC_008436 NA coding downstream 31127 19752881 ~ 19755818 (+)
XLOC_008437 zpld1b coding downstream 61598 19783352 ~ 19793361 (+)
XLOC_008438 si:ch211-229d2.5 coding downstream 76164 19797918 ~ 19803478 (+)
XLOC_008439 alcamb coding downstream 116704 19838458 ~ 19878987 (+)
XLOC_008440 dyrk1ab coding downstream 162488 19884242 ~ 19896816 (+)
XLOC_008463 BX663520.1 misc downstream 1530437 21252191 ~ 21252282 (+)
XLOC_008428 BX324206.3 non-coding upstream 397498 19287632 ~ 19291377 (+)
XLOC_008427 BX324206.2 non-coding upstream 402732 19284842 ~ 19286143 (+)
XLOC_008426 NA non-coding upstream 501041 19182848 ~ 19187834 (+)
XLOC_008425 NA non-coding upstream 530967 19155890 ~ 19157908 (+)
XLOC_008423 NA non-coding upstream 896017 18788416 ~ 18792858 (+)
XLOC_008449 NA non-coding downstream 689538 20411292 ~ 20458876 (+)
XLOC_008454 CR848784.1 non-coding downstream 1175349 20897103 ~ 20901355 (+)
XLOC_008455 NA non-coding downstream 1282979 21004733 ~ 21093616 (+)
XLOC_008456 NA non-coding downstream 1295895 21017649 ~ 21037778 (+)

Expression


Co-expression Network