XLOC_008430 (vps26b)


Basic Information

Item Value
gene id XLOC_008430
gene name vps26b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 19324697 ~ 19331078 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016869
GACCTAGGAAGTGCGGAAGTTGTTTTACTGGCAAATATCGTTCCTGTTAGCTGTCCTGCTGCAAATCGAGCTACTtacaaaaataacagaaatatgcGTCAGATTTCGACCAtaacatattaatatttcaaTTCAGCCGCGGACAGTGTTCTTTCGAACAGCGTATGCACTTGTTTTTAAGGTCAgttgttattaaaaaataaggCATCAGGGCGCTCGTGAATTGCACAGCCACCTGTAGCTGAGCACAGCAGCTGTCACTCAACTGGCCTATGCTTTATGATACAGTATTATTGACAGGAATATGAGCTTCTTCGGCTTCGGACAGACCGCTGAGATCGATATCGTGCTGAATGACGCCGAAACCAGGAAGAAAGTTGAGCACAAGACTGAAGATGGCAAAAAGGACAAATATTTCCTTTTCTATGATGGCGAAACTGTAAGTGGCAAAGTGAACGTGACTCTCAAGACTCCTGGAAAGAGACTCGAACATTATGGCATAAAAATCGAGTTCGTCGGGCAGATAGAGCTCTACTATGACAGAGGGAACCATCATGAGTTTGTGTCGTTAGTGAAGGATCTTGCCCGACCTGGTGAACTTTCACAGTCGCAGACCTTTGATTTTGAGTTCACCCATGTGGAAAAGCCATATGAATCTTACACTGGACAGAATGTCAAGCTGAGATACTTTCTCCGGGCAACAATCAGCAGAAGACTCAATGATATCAGTAAAGAGATGGATATTGTAGTGCAGACGCTGTGCACATATCCTGAGATCAACTCCTCCATCAAGATGGAAGTGGGAATTGAAGATTGTCTTCATATTGAGTTTGAATACAACAAATCCAAGTACCACTTGAGGGATGTTATCGTAGGAAAGATTTATTTCCTTCTTGTGAGGATAAAGATTAAGCATATGGAAATCGATATCATAAAAAGGGAAACAACTGGAACAGGGCCCAGTGTCTACCACGAAAATGACACTATCGCCAAATATGAGATCATGGATGGGGCACCTGTGAGAGGGGAGTCCATCCCCATCCGCTTATTTCTGGCCGGATATGAAATGACGCCAACCATGAGGGACATCAACAAGAAGTTCTCTGTGCGTTACTACCTGAACCTCGTGCTTATAGATGAGGAAGAGCGACGATACTTCAAACAGCAGGAGATCACACTCTGGAGGAAAGGAGACATCGTGAGGAGAAGCATGTCCCAACAGGCCACCATAGCGGCTCAGAGGTATGAGGGATCAAACCCTGAACCTACGTCAGCGCAAGCCAAAGAGGAGACCGACTAGACGTTCTCCGTTCCCTCAGCCGCTGAAACGAACCTtgttacattaaaatgttttatacgTCTTGAAGGGATCAAAAATGAGAATCGTCGCTTCGTGAGATCAAAACATAAGAATTCCGCCTGTAAAAGGCTAGACTAGCTAATTCAACGTGTATAGAttacaaactatttttttatttctccttCAAATACCGCATGTTTTCGTTACACGAGTGACCAACGATTTTTGAAACGATCTTCACATGTCTACGCCACTGTTATATATTTGATTGAGTTGAACGTCTCAAAACATTCCTCTTAAGTCTAGTGCACTGAGGAGTCAGAATCACGCTTCTATACTTTTGTCCTGTCTAATGAGCCCTAAATGAGATTTACTGTGATCTTTTTGTCTTATGAATTTTGCGCTTTATAGAGCTCTGCACAGTATTATTCTGTCATTTAGGGCATTATAAATGAAGGCCTGCGTAGAAATGTGTTATAAGGGAAATTCTTGTCGACTACTAACTTGTGCAAATCAGTGTCTTTTTCATGACTATTTTTATTGAATCTTTTTTTGATTTGGTGTCTTAAGTGTTTATTTCCTGTTAGAAACAATCAACAGAATCGTCAATATCGACAGCAGTTCCAGTATTCTCAAATTTACACATGCTGtcgtagaaaaaaaaattatgattgaTTGCTACTCATTTTTAAGGTAAATTTTCCATTCTTACATGTGTGTATCATTGTATTATACTAAATATTTCTTTATTAGCTGTTCAGGTGATGAGGAATGACTATTAACTGCCATGCAACCGTGAAAACTTCTGCAAAAGGCTTCTATTTAATCAGCCCTATTGTAATAAAATTTACTAACCTCTGCA
>TCONS_00016870
GCAAATATCGTTCCTGTTAGCTGTCCTGCTGCAAATCGAGCTACTtacaaaaataacagaaatatgcGTCAGATTTCGACCAtaacatattaatatttcaaTTCAGCCGCGGACAGTGTTCTTTCGAACAGCGTATGCACTTGTTTTTAAGTATTATTGACAGGAATATGAGCTTCTTCGGCTTCGGACAGACCGCTGAGATCGATATCGTGCTGAATGACGCCGAAACCAGGAAGAAAGTTGAGCACAAGACTGAAGATGGCAAAAAGGACAAATATTTCCTTTTCTATGATGGCGAAACTGTAAGTGGCAAAGTGAACGTGACTCTCAAGACTCCTGGAAAGAGACTCGAACATTATGGCATAAAAATCGAGTTCGTCGGGCAGATAGAGGGAACCATCATGAGTTTGTGTCGTTAGTGAAGGATCTTGCCCGACCTGGTGAACTTTCACAGTCGCAGACCTTTGATTTTGAGTTCACCCATGTGGAAAAGCCATATGAATCTTACACTGGACAGAATGTCAAGCTGAGATACTTTCTCCGGGCAACAATCAGCAGAAGACTCAATGATATCAGTAAAGAGATGGATATTGTAGTGCAGACGCTGTGCACATATCCTGAGATCAACTCCTCCATCAAGATGGAAGTGGGAATTGAAGATTGTCTTCATATTGAGTTTGAATACAACAAATCCAAGTACCACTTGAGGGATGTTATCGTAGGAAAGATTTATTTCCTTCTTGTGAGGATAAAGATTAAGCATATGGAAATCGATATCATAAAAAGGGAAACAACTGGAACAGGGCCCAGTGTCTACCACGAAAATGACACTATCGCCAAATATGAGATCATGGATGGGGCACCTGTGAGAGGGGAGTCCATCCCCATCCGCTTATTTCTGGCCGGATATGAAATGACGCCAACCATGAGGGACATCAACAAGAAGTTCTCTGTGCGTTACTACCT
>TCONS_00016871
GAAACCAGGAAGAAAGTTGAGCACAAGACTGAAGATGGCAAAAAGGACAAATATTTCCTTTTCTATGATGGCGAAACTGTAAGTGGCAAAGTGAACGTGACTCTCAAGACTCCTGGAAAGAGACTCGAACATTATGGCATAAAAATCGAGTTCGTCGGGCAGATAGGTGAGTGTTTTGTTGGTGAATGCACGGTTGGGGTTGTGTTTGTGTAAACGTGTGGTGGTGTGCTTCACAGAGCTCTACTATGACAGAGGGAACCATCATGAGTTTGTGTCGTTAGTGAAGGATCTTGCCCGACCTGGTGAACTTTCACAGTCGCAGACCTTTGATTTTGAGTTCACCCATGTGGAAAAGCCATATGAATCTTACACTGGACAGAATGTCAAGCTGAGATACTTTCTCCGGGCAACAATCAGCAGAAGACTCAATGATATCAGTAAAGAGATGGATATTGTAGTGCAGACGCTGTGCACATATCCTGAGATCAACTCCTCCATCAAGATGGAAGTGGGAATTGAAGATTGTCTTCATATTGAGTTTGAATACAACAAATC

Function

symbol description
vps26b Predicted to be involved in intracellular protein transport and retrograde transport, endosome to Golgi. Predicted to act upstream of or within protein transport. Predicted to be located in cytoplasm and membrane. Predicted to be part of retromer complex. Predicted to be active in endosome. Orthologous to human VPS26B (VPS26, retromer complex component B).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0042147 retrograde transport, endosome to Golgi biological_process
GO:0015031 protein transport biological_process
GO:0005768 endosome cellular_component
GO:0016020 membrane cellular_component
GO:0030904 retromer complex cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2699 Predicted to be involved in intracellular protein transport and retrograde transport, endosome to Golgi. Predicted to act upstream of or within protein transport. Predicted to be located in cytoplasm and membrane. Predicted to be part of retromer complex. Predicted to be active in endosome. Orthologous to human VPS26B (VPS26, retromer complex component B).

Ensembl:

ensembl_id ENSDARG00000015823

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016869 False 2162 mRNA 0.41 6 19324697 19331078
TCONS_00016870 False 966 nonsense_mediated_decay 0.43 6 19324727 19329943
TCONS_00016871 True 555 lncRNA 0.43 2 19325058 19327754

Neighbor

gene id symbol gene type direction distance location
XLOC_008429 jam3a coding upstream 4082 19293744 ~ 19320615 (+)
XLOC_008428 BX324206.3 coding upstream 33320 19287632 ~ 19291377 (+)
XLOC_008427 BX324206.2 coding upstream 38554 19284842 ~ 19286143 (+)
XLOC_008426 NA coding upstream 136863 19182848 ~ 19187834 (+)
XLOC_008425 NA coding upstream 166789 19155890 ~ 19157908 (+)
XLOC_008431 acad8 coding downstream 4568 19335646 ~ 19348383 (+)
XLOC_008432 zgc:77784 coding downstream 125034 19456112 ~ 19602329 (+)
XLOC_008433 lim2.3 coding downstream 315824 19646902 ~ 19660757 (+)
XLOC_008434 si:dkey-4p15.5 coding downstream 350640 19681718 ~ 19688389 (+)
XLOC_008435 CR626889.1 coding downstream 357797 19688875 ~ 19721754 (+)
XLOC_008463 BX663520.1 misc downstream 1921113 21252191 ~ 21252282 (+)
XLOC_008423 NA non-coding upstream 531839 18788416 ~ 18792858 (+)
XLOC_008436 NA non-coding downstream 421803 19752881 ~ 19755818 (+)
XLOC_008449 NA non-coding downstream 1080214 20411292 ~ 20458876 (+)
XLOC_008454 CR848784.1 non-coding downstream 1566025 20897103 ~ 20901355 (+)
XLOC_008455 NA non-coding downstream 1673655 21004733 ~ 21093616 (+)

Expression


Co-expression Network