XLOC_008423


Basic Information

Item Value
gene id XLOC_008423
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 18788416 ~ 18792858 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016860
tctttgattatcagatttaataaactactagAATGGACATACAAGTATAAAGTAGATATATACAATAGGAATTAAAGGTAACCAGCttggtaaacaaagacagagTACAACATTgtagcattaataaataaattaattaataaaacaattataaaacgtAACAGaataatactgccaaaataatacagctgagaacaaataatagatttaaaagaccaaaagcTGGCCGTTAGATatacacaaaatgtattaaatataatgttttaactACAAGGGGGAGATTGAATCCAGCGGCAGATCCGAGATTGACTGGCCGAAGTAAATGCTGCTGTCGGCGGGGGAGAGAATCATAAAGCTCCCGCTGACAGAGTCCGCTTTCACTGAAGCACATTGTCAAAGAAGCGctgtctttttaaataaactgccgattcgagtttaaaacaactacattctcgcctgaaataCTCTTAAAACTACATTTTGTGACACAttagatgattttttttaaacttgcggGTCTGCAAAGCGGGGATTGTCCATTGACTTTCGTTTAGCATTAGCAGGCAGCCAGCAGATTTGAATTCGTGTTGTCCAATAGGATTTTGCCCGCGCCGTGCATTCATAATGCGAGCTGATTACGTGCGACGGTTAATCTCCTGCTGTTGCACTGTTCTGACGCTCTTCTCGCCGCCGATGGAGGATGGACCTGAAGGACTCAAAGGAGCTGGAATACGCTCGTGAAGACGAAGCACAGACATTTGCAGaaaatgaaGTGGACGAGGAAGCAGTAGTGTAATAGCGTGATTCCTGCAATTGGTGAggatgaatcatcttttgaggGTAATGCGAATGTCCTGCGTATCCAGTGAAATAAGtcaTGGTGAACCTGACTGAATGCATTCATCAACCATCTCCAACCAAGTCAGAGCTTCAAGGACAGCTTGTGCTAAAAGTGCCTGAGCTTGATTAAGAAAAAAAGCATCTCCACTGGCCAAAGTCTACAAAAAAGCAGGAGAATAGAAGTTTGCAGATGATCTAACAGgtggcgcagtgggtagcacgatcgcctcacatcaagaaggttgctggttcgtgactcggctgggtcagttggcatttctgtgtggagtttgcatgttctccccatgttgacgtgggtttcctccaggtgctccggtttcctccacaagtccaagtccaacaagtccaaagacgtgctacaggtgaattggTGGGGTGATGATGATGCTCCTTACCCACCTCTACAGATGGTTGAAAGTCCTTTGCAAAGTGTTGGAGATTAGGAGTTAAAAGGCATTATTACATCCTTCGCCGTTTACTGTGTTTTCAACTTGGCTTATCCACGctacataaagaatgcaaaggATGAACATCAGCAACTCCCCGAGATGGAACAACAATTTAAATTTGAAGATTAGCAATGGTGTGAAGATGGAGATCCAAAATTACAAGAAAAACAACTCAGTGCAGCTGTCCGAGAGAACTGGTATTGCTGGGTCTGCATCAAACAGCAATGCTTGGATCTTTGCATTTACTTTTTTACATGCGTTTCGAGTCTGCATCAGTATTTTAAGACTAGCAGCTGtagacattttaataacattgCCCAAATCAACTGAGAAGCACAAGATGACAATGCTAAGAATTTTTTCCGCCCAACATCCTTGATGAGATTGACACATTCAGGTGTTCAAATTGAACTGTTTTTGTGAGCATGTGAGACTGCTAATGGAGAAGAAATGACTCTTTCCTAATGAAATACAGTTTAAATGTCAATACTGCACTGGTTTCTGTGTGGCAAGTTTATAATACTGCTTTTGTATGTTTCATATTTCCATGCAAATACACTAGGAGTTGACTTTGAATGGGGTGTTATAAACCAAGACAGACGGACTTTCAGGCTCTTGAAACATACTCTGCTGATAAActgtttaagaatgtttagaaattttaaatcaaatgtgTAATACTGTTTgatcaaatgtgtttttgagatctaaaatgaTTAAGGGTATACAGTAAGTGACATGTTTCAATGTACTGTATGGAAAAAGATTGCTTTGAGATTCTTGATGCTTTTAGAAAAATGTAGAATGCAGTGCACTAACAGAAATATACTTCATGAGGTCTAGTGCTGTTAGAAAAATTACTTTGTTACATTGGTAAAAATGCTCAGTGAAATGGGATGTActggtgttaaaaaataatattaagcttttttgctgtttcataaaatgtttaagcagctattttttaagtttatgcaTCTGGTAGGACATTGTGGTAATTTAAAACTTTCATCCTCTAAAAAGGtgacaatgtaatttttttgaatCTTTCAATGAGTGTTTGTGATAAAATGTTACAagtataaaagtacaattatCGTGCAGTTTGTACTCATggaaaaatattgctttttattattttaaaatgatgtaatgtttaaacattcatcctgtaaaaatgttgatatttaatatgtttaataaatgtgataaatgaaa
>TCONS_00018919
CAATAGGATTTTGCCCGCGCCGTGCATTCATAATGCGAGCTGATTACGTGCGACGGTTAATCTCCTGCTGTTGCACTGTTCTGACGCTCTTCTCGCCGCCGATGGAGGATGGACCTGAAGGACTCAAAGGAGCTGGAATACGCTCGTGAAGACGAAGCACAGACATTTGCAGGtatgtttaatgttaaaaaactTATTGTGAATATCCGTTGGGTCATATTCAATTCATAATTGACGTTACTTTGCCTTGTGTATGTAACTGCGTTATGATTACCGTCGAGTTACCTGCCGCGTGAGGGGACCCTTTTGTAATTTAAGGTTGACCAGCAATGAAAATATGATTTTTCACATAATTAACCTGGCCATGAGACAGAGCTCGAGACGCTGAAAAAACAGCGGTGAAACGTCCAGAGAAACAGTTCAAACACATTTCGTTTTGTTTAGATAATGTTGTTAAGCCTTTATTGCATacgttatttataaattcagaatTTTCTCAGTGTTGGGAAGCTAACATTAACGTTCATGCTATCATTCATGTTTACTCAGGACAGAAGTGAAGTGAATGCCTGTCCCCTTTAtgtctgaaacaatataactttaGTTTATGCATATCTCGACCCACGTTCATTTATAGCAGTTGTATTTTGTAacgttacatatttaaataacgtTATAAACGTATGTTCAAGAGAGTCCTAATCTGTCGTGTCAGATCGAGGTGCAGGTCTTTATCAAACCTTTGAGTTgctaatttaaagcttttttttgttAGCTGTTAACCTCAAGTTCACAccgatcatgattttttttttatttcagaaaatgaaGTGGACGAGGAAGCAGTAGTGTAATAGCGTGATTCCTGCAATTGGTGAggatgaatcatcttttgaggGTAATGCGAATGTCCTGCGTATCCAGTGAAATAAGtcaTGGTGAACCTGACTGAATGCATTCATCAACCATCTCCAACCAAGTCAGAGCTTCAAGGACAGCTTGTGCTAAAAGTGCCTGAGCTTGATTAAGAAAAAAAGCATCTCCACTGGCCAAAGTCTACAAAAAAGCAGGAGAATAGAAGTTTGCAGATGATCTAACAGGTAT
>TCONS_00018921
ttTCCCTAGGAATTCATTGTGCAGTCTTAAATTTAATCTCCCTTTTTCTATGAACTGTAAAGTGAAGTGTTAAAGTTAAATTTGAATTTTTATGATTGTCATTATTTTTGACTTATATTTGATCCAATAGGTGATTCCTGCAATTGGTGAggatgaatcatcttttgaggGTAATGCGAATGTCCTGCGTATCCAGTGAAATAAGGTGTGTGACCCTTTATTAAAAACACCCTTGTCAGTGAGATCCCACATTTTAAATCAGTTCtcagtttaaattaaatgtttaatgtcagTATAAGCCAAAGTGTAGGATCAAAtgactattataaatgttatgactattgtaaaaatattttatttttcaagctTTATGGTGAACACGTGTGCATTCAAGCTTACAACTATTTGTACAGTGATAACTAAAGGGAAATGGCAACAAAGAATATtagatatagtttttatttaaagtgaatcactaatttcctttttgtttattatagtcaTGGTGAACCTGACTGAATGCATTCATCAACCATCTCCAACCAAGTCAGAGCTTCAAGGACAGCTTGTGCTAAAAGTGCCTGAGCTTGATTAAGAAAAAAAGCATCTCCACTGGCCAAAGTCTACAAAAAAGCAGGAGAATAGAAGTTTGCAGATGATCTAACAGGTATTACCATAAaacttacataataataattttgcagaTCAAACCTTTATTTCTTGGATGGGATCATTAAGTGCCTTTTCAAGCTGCATTTAGAAAGGTTAAACTCATAGGCCTTATATACAAACCCTTTATATAGAGAACATTTCtcaatgtttttctttaaaaaatgtaattcataaaaatacattaaatatcttTCATTCAGCATTTGCTAAAGgttccaatattttttttctttattttaaaaacgggtactttatattattaaatcatttaagaGTACttcattatttatctttattttatttaaaggtggcgcagtgggtagcacgatcgcctcacatcaagaaggttgctggttcgtgactcggctgggtcagttggcatttctgtgtggagtttgcatgttctccccatgttgacgtgggtttcctccaggtgctccggtttcctccacaagtccaagtccaacaagtccaaagacgtgctacaggtgaattggTGGGGTGATGATGATGCTCCTTACCCACCTCTACAGATGGTTGAAAGTCCTTTGCAAAGTGTTGGAGATTAGGAGTTAAAAGGCATTATTACATCCTTCGCCGTTTACTGTGTTTTCAACTTGGCTTATCCACGctacataaagaatgcaaaggATGAACATCAGCAACTCCCCGAGATGGAACAACAATTTAAATTTGAAGATTAGCAATGGTGTGAAGATGGAGATCCAAAATTACAAGAAAAACAACTCAGTGCAGCTGTCCGAGAGAACTGGTATTGCTGGGTCTGCATCAAACAGCAATGCTTGGATCTTTGCATTTACTTTTTTACATGCGTTTCGAGTCTGCATCAGTATTTTAAGACTAGCAGCTGtagacattttaataacattgCCCAAATCAACTGAGAAGCACAAGATGACAATGCTAAGAATTTTTTCCGCCCAACATCCTTGATGAGATTGACACATTCAGGTGTTCAAATTGAACTGTTTTTGTGAGCATGTGAGACTGCTAATGGAGAAGAAATGACTCTTTCCTAATGAAATACAGTTTAAATGTCAATACTGCACTGGTTTCTGTGTGGCAAGTTTATAATACTGCTTTTGTATGTTTCATATTTCCATGCAAATACACTAGGAGTTGACTTTGAATGGGGTGTTATAAACCAAGACAGACGGACTTTCAGGCTCTTGAAACATACTCTGCTGATAAActgtttaagaatgtttagaaattttaaatcaaatgtgTAATACTGTTTgatcaaatgtgtttttgagatctaaaatgaTTAAGGGTATACAGTAAGTGACATGTTTCAATGTACTGTATGGAAAAAGATTGCTTTGAGATTCTTGATGCTTTTAGAAAAATGTAGAATGCAGTGCACTAACAGAAATATACTTCATGAGGTCTAGTGCTGTTAGAAAAATTACTTTGTTACATTGGTAAAAATGCTCAGTGAAATGGGATGTActggtgttaaaaaataatattaagcttttttgctgtttcataaaatgtttaagcagctattttttaagtttatgcaTCTGGTAGGACATTGTGGTAATTTAAAACTTTCATCCTCTAAAAAGGtgacaatgtaatttttttgaatCTTTCAATGAGTGTTTGTGATAAAATGTTACAagtataaaagtacaattatCGTGCAGTTTGTACTCATggaaaaatattgctttttattattttaaaatgatgtaatgtttaaacattcatcctgtaaaaatgttgatatttaatatgtttaataaatgtgataaatgaaa
>TCONS_00018920
ttTCCCTAGGAATTCATTGTGCAGTCTTAAATTTAATCTCCCTTTTTCTATGAACTGTAAAGTGAAGTGTTAAAGTTAAATTTGAATTTTTATGATTGTCATTATTTTTGACTTATATTTGATCCAATAGGTGATTCCTGCAATTGGTGAggatgaatcatcttttgaggGTAATGCGAATGTCCTGCGTATCCAGTGAAATAAGGTGTGTGACCCTTTATTAAAAACACCCTTGTCAGTGAGATCCCACATTTTAAATCAGTTCtcagtttaaattaaatgtttaatgtcagTATAAGCCAAAGTGTAGGATCAAAtgactattataaatgttatgactattgtaaaaatattttatttttcaagctTTATGGTGAACACGTGTGCATTCAAGCTTACAACTATTTGTACAGTGATAACTAAAGGGAAATGGCAACAAAGAATATtagatatagtttttatttaaagtgaatcactaatttcctttttgtttattatagtcaTGGTGAACCTGACTGAATGCATTCATCAACCATCTCCAACCAAGTCAGAGCTTCAAGGACAGCTTGTGCTAAAAGTGCCTGAGCTTGATTAAGAAAAAAAGCATCTCCACTGGCCAAAGTCTACAAAAAAGCAGGAGAATAGAAGTTTGCAGATGATCTAACAGGTATTACCATAAaacttacataataataattttgcagaTCAAACCTTTATTTCTTGGATGGGATCATTAAGTGCCTTTTCAAGCTGCATTTAGAAAGGTTAAACTCATAGGCCTTATATACAAACCCTTTATATAGAGAACATTTCtcaatgtttttctttaaaaaatgtaattcataaaaatacattaaatatcttTCATTCAGCATTTGCTAAAGgttccaatattttttttctttattttaaaaacgggtactttatattattaaatcatttaagaGTACttcattatttatctttattttatttaaaggtggcgcagtgggtagcacgatcgcctcacatcaagaaggttgctggttcgtgactcggctgggtcagttggcatttctgtgtggagtttgcatgttctccccatgttgacgtgggtttcctccaggtgctccggtttcctccacaagtccaagtccaacaagtccaaagacgtgctacagTGGGGTGATGATGATGCTCCTTACCCACCTCTACAGATGGTTGAAAGTCCTTTGCAAAGTGTTGGAGATTAGGAGTTAAAAGGCATTATTACATCCTTCGCCGTTTACTGTGTTTTCAACTTGGCTTATCCACGctacataaagaatgcaaaggATGAACATCAGCAACTCCCCGAGATGGAACAACAATTTAAATTTGAAGATTAGCAATGGTGTGAAGATGGAGATCCAAAATTACAAGAAAAACAACTCAGTGCAGCTGTCCGAGAGAACTGGTATTGCTGGGTCTGCATCAAACAGCAATGCTTGGATCTTTGCATTTACTTTTTTACATGCGTTTCGAGTCTGCATCAGTATTTTAAGACTAGCAGCTGtagacattttaataacattgCCCAAATCAACTGAGAAGCACAAGATGACAATGCTAAGAATTTTTTCCGCCCAACATCCTTGATGAGATTGACACATTCAGGTGTTCAAATTGAACTGTTTTTGTGAGCATGTGAGACTGCTAATGGAGAAGAAATGACTCTTTCCTAATGAAATACAGTTTAAATGTCAATACTGCACTGGTTTCTGTGTGGCAAGTTTATAATACTGCTTTTGTATGTTTCATATTTCCATGCAAATACACTAGGAGTTGACTTTGAATGGGGTGTTATAAACCAAGACAGACGGACTTTCAGGCTCTTGAAACATACTCTGCTGATAAActgtttaagaatgtttagaaattttaaatcaaatgtgTAATACTGTTTgatcaaatgtgtttttgagatctaaaatgaTTAAGGGTATACAGTAAGTGACATGTTTCAATGTACTGTATGGAAAAAGATTGCTTTGAGATTCTTGATGCTTTTAGAAAAATGTAGAATGCAGTGCACTAACAGAAATATACTTCATGAGGTCTAGTGCTGTTAGAAAAATTACTTTGTTACATTGGTAAAAATGCTCAGTGAAATGGGATGTActggtgttaaaaaataatattaagcttttttgctgtttcataaaatgtttaagcagctattttttaagtttatgcaTCTGGTAGGACATTGTGGTAATTTAAAACTTTCATCCTCTAAAAAGGtgacaatgtaatttttttgaatCTTTCAATGAGTGTTTGTGATAAAATGTTACAagtataaaagtacaattatCGTGCAGTTTGTACTCATggaaaaatattgctttttattattttaaaatgatgtaatgtttaaacattcatcctgtaaaaatgttgatatttaatatgtttaataaatgtgataaatgaaa

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0007492 endoderm development biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0043297 apical junction assembly biological_process
GO:0010648 negative regulation of cell communication biological_process
GO:0043011 myeloid dendritic cell differentiation biological_process
GO:0002030 inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0003401 axis elongation biological_process
GO:0001773 myeloid dendritic cell activation biological_process
GO:0070830 bicellular tight junction assembly biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0060974 cell migration involved in heart formation biological_process
GO:0060975 cardioblast migration to the midline involved in heart field formation biological_process
GO:1904323 regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:1904325 positive regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol biological_process
GO:0023057 negative regulation of signaling biological_process
GO:0009968 negative regulation of signal transduction biological_process
GO:0007369 gastrulation biological_process
GO:0003260 cardioblast migration biological_process
GO:0010524 positive regulation of calcium ion transport into cytosol biological_process
GO:1903587 regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:1903589 positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0060026 convergent extension biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0060029 convergent extension involved in organogenesis biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:0120192 tight junction assembly biological_process
GO:0120193 tight junction organization biological_process
GO:0060182 apelin receptor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko02010 ABC transporters
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016860 False 2528 lncRNA 0.38 6 18788416 18792858
TCONS_00018919 False 1104 lncRNA 0.40 3 18789008 18790673
TCONS_00018921 False 2465 lncRNA 0.34 2 18790003 18792858
TCONS_00018920 True 2456 lncRNA 0.34 2 18790003 18792858

Neighbor

gene id symbol gene type direction distance location
XLOC_008422 NA coding upstream 387208 18385590 ~ 18401208 (+)
XLOC_008421 dixdc1a coding upstream 632425 18130109 ~ 18155991 (+)
XLOC_008420 CR385077.2 coding upstream 701600 18086702 ~ 18086816 (+)
XLOC_008419 NA coding upstream 852288 17886198 ~ 17936128 (+)
XLOC_008418 zgc:113279 coding upstream 931538 17848590 ~ 17856878 (+)
XLOC_008424 cadm1b coding downstream 71014 18863872 ~ 18988585 (+)
XLOC_008425 NA coding downstream 363032 19155890 ~ 19157908 (+)
XLOC_008426 NA coding downstream 389990 19182848 ~ 19187834 (+)
XLOC_008427 BX324206.2 coding downstream 491984 19284842 ~ 19286143 (+)
XLOC_008428 BX324206.3 coding downstream 494774 19287632 ~ 19291377 (+)
XLOC_008463 BX663520.1 misc downstream 2459333 21252191 ~ 21252282 (+)
XLOC_008412 CR848791.3 non-coding upstream 1410353 17376367 ~ 17378063 (+)
XLOC_008411 dre-mir-21-2 non-coding upstream 1414501 17373789 ~ 17373915 (+)
XLOC_008435 CR626889.1 non-coding downstream 896017 19688875 ~ 19721754 (+)

Expression


Co-expression Network