XLOC_008418 (zgc:113279)


Basic Information

Item Value
gene id XLOC_008418
gene name zgc:113279
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 17848590 ~ 17856878 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016853
GACACACTTGTTGCATGAAGACTGGCAGGCACTGAGCCTAAGCCCTTTATTACACAATTGTTTTGCGTTTGTTGTCATAAGTCTGAACGCTTTGCACTTTATAGTCAGATTTATAACAGGACAACAGGATGGTGAGCAGTCAGGCAGAGGGTACAGGGTGGAATTTGATTCCTAAAAACTGTGAACACCGCGAATATTCGTGTGACGGGTCGCAGATGACAACAGAACCTTCTACACGTGCAAACGGACCGAATCTAACCATGCAGACCCATAACCTGTCAGGGAACAGCAGCCGAAAAGgaCCCAAAAAACACAAGTCCACACCTGAAAAGAAATACCTTGGAGTTAAAGTGAGAATGCCAGTACGTGACATGCTAAGAAATATAAGGATAGCCAAGGGTATTGACCCTAATGATCTGCAGggAAAATGCAAGTCATCTAAAGGGGATAAGAAACGAGTTAACACAAGTGCTAACCGGAGGCGTATTCTGACGAAACATGAAACAAAGGATCTAGAGGATCTGGCTATTATTGTGGAAGTACTGGAAGAGGATCTTAAGACCTGTCAGTCGTACAAGCCACCAAACCAAAGCAATTCACCTTCATACTCTACAAAGTTCTGTTTTAAAGATGCCTTGCAGCAGGGTTTCATGAGCCCATGTTATCAGGAGAATGAAAAACCTCTGTCTCCAAGCTACTCTGTACCCTCAGGCACATCACCTGTACATTCTGTGTGCAGCTCCTACCCATCGCCAACTTACAGCCATGGTGGAGATGCCTTCTTGGGGAATCAGGAAGAATACAGCAGTTATGAGTCGGATAAGTACATGTATGATGATCTCTATGGTACAAGCTACTCTCCTGCCAATTCAAAGGAATACCAGGAGCCCTCCTCACAAGAATCATTCAATTCCAGTCCCAATCCAGAAACCTGGGAGGTTTCTTCTCAAAAGTGGAACTATGCATTATGGCCACATTCTCAGCAGGAGATGAGTGATATGACCTTCTACTGCACACAAATGGAAAGAGAAGAGCATGTGCTGCAGCAGATTTCTGACCAAGAACTTCTTGCTGTTGGTGAAGACGGCAGAACTCTTTTACACAGGGTTGTGATGGAGGGAAAGAGATCCCTTGTGTATGTTATTGCCAGAAGGATGGCATCTCTGAAGAAACTAGATATCAAAGATTCAGAGGGAAAGACTCCCCTTCATCTCGCTGCACAGAAGAATCAACACTTCATGGTGGCTGATTTGGTGTCACTTGGCGCAAATATCAATGCGAAAGAGCGATATGGGAAAACTTGCCTCCATCTCAGTGCAGAGAATGGCTATATTCGAGTGATGGAGATCCTGAGAGGTTTAATGAAGAATGGCATGTATTTGAATTTGGAGGAAAGAGATGCGAATGGGCTCAGTGCATTGCAATGCGCAGCAGTGGCTCTGAAACACACGGTGCAGCAGCTGGAGCTCTGCGAGTCTGTGGGACAGGTCAAACTACACAGCCTTCGCAAAGAGCAGATGATGGAGACCCTCGAGTGCCTCCTTCAGATGGAGAGCTACTTACATGCTCCGGCCAGCAACAACCCGATTTAGAAGCATGTTCGGCCACATGGGTCTGCTTCTAGCAAGAGTTGTTTGTAATGCTAGGCAGTGCTTTTAACTGACGGTAAATGTTTTTGAGTGAATACAAGCTTGAATCTGCCATTGAAGATAGTGTACACATAATCAAGAGGATTAGGAACATCTTCGTGGCATGGTAAAGCTATGTATTATGCAACCAGAAGTTTTGTTCAGCGTTCAGGTGAGAATCGAGGTTTATCGCTGCGCAAACACAAAATGGTTGCCCATTAGCTGGTTTCTGTGAAACTTCCACTGTTAGCTATGCTTGAGTAGCAAAATGTTTTAAAGGGGATTACAAATGTGGTAAGACCTTCAAGTTGATCAAATGCCACGGTTCCTATTTGCTCCAAGAGCAAATAGTTAAGATATTAAGGAAATAGTGTTATTTGTACTAATATACAATGGCAAAATGCAGTAACTGTGTCTTTTTGTATGGTTTTATTCATCAAGGTGTGTTCACATATATCAGGATTGATTTGATTTAAACAAATGCTAGTGCAATCACCTCTTATTATCGGTCATTTATATCAGGGGTCAACCCCCAAAATAACCAGTGATTCGCGAGCCCCAATATCCTCGAAGGTGATtctaaacatacaaacattgcacacaatggtgcacatACACCAATAGGAATTATATAAacacgagcatattgacaacacaaaaaagtgcaacagtctaacaaccatagcCTTTTTAAGTCATTAttcaattgtttaatttaatattaactgactttttatttctgttgttttttatgtaactaaTAAATATCGTAATAGCGTAATATTGTTATCTTCTataggttatgaataaaatatggtaattctaatggATTAATAacatatacaggtgaagtcagaattattaa

Function

symbol description
zgc:113279 Predicted to be involved in regulation of gene expression. Predicted to be active in nucleus.

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-529 Predicted to be involved in regulation of gene expression. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000099533

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016853 True 2493 mRNA 0.42 10 17848590 17856878

Neighbor

gene id symbol gene type direction distance location
XLOC_008417 si:ch211-213d14.2 coding upstream 90596 17752915 ~ 17757994 (+)
XLOC_008416 si:ch211-213d14.1 coding upstream 100271 17722054 ~ 17748319 (+)
XLOC_008415 adamts15b coding upstream 195783 17621375 ~ 17652807 (+)
XLOC_008414 snx19b coding upstream 358864 17441734 ~ 17489726 (+)
XLOC_008413 rps6kb1b coding upstream 424000 17406920 ~ 17424590 (+)
XLOC_008419 NA coding downstream 29320 17886198 ~ 17936128 (+)
XLOC_008420 CR385077.2 coding downstream 229824 18086702 ~ 18086816 (+)
XLOC_008421 dixdc1a coding downstream 273231 18130109 ~ 18155991 (+)
XLOC_008422 NA coding downstream 528712 18385590 ~ 18401208 (+)
XLOC_008423 NA coding downstream 931538 18788416 ~ 18792858 (+)
XLOC_008463 BX663520.1 misc downstream 3395313 21252191 ~ 21252282 (+)
XLOC_008412 CR848791.3 non-coding upstream 470527 17376367 ~ 17378063 (+)
XLOC_008411 dre-mir-21-2 non-coding upstream 474675 17373789 ~ 17373915 (+)
XLOC_008403 BX571762.2 non-coding upstream 927603 16914731 ~ 16920987 (+)
XLOC_008400 BX649487.2 non-coding upstream 1018714 16829762 ~ 16829876 (+)
XLOC_008398 CR847990.1 non-coding upstream 1329507 16518967 ~ 16519083 (+)
XLOC_008425 NA non-coding downstream 1299012 19155890 ~ 19157908 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000053_01759982_01765920 NA coding CI01000053 null 1758685 ~ 1766084 (-)