XLOC_008416 (si:ch211-213d14.1)


Basic Information

Item Value
gene id XLOC_008416
gene name si:ch211-213d14.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 17722054 ~ 17748319 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016845
GGGCTTATGGTTCAACGAAGCAAACAACCACAAGGACGCGGCACGAACTGTCAGTTGTAAAGAGAGAGAATGCTCGAAAAGAGTGTATCAGGGTGTCCGGGTGAAGCACACTGTAAAAGATCTCCTGGCAGAAAAGAGGTCACGTCAGACAAGCGGCCCGCGCTACACCGGTGTTTCATCTCCTCCAAATCCATTTGTTCAAATGACTGGTGAGTTTACAATACAGGTGTATTTAATTCtaaaatgtgcaattttatttttagatttcttcTGTGgtcaattatttaataataataatccaaatgGCTGTGGTCTCTTCAGGTTCTCACATGCTCCCGAGTTACTATGGCATGAGAAGACCTTTCATTTCAGAGACAGAGTTCTGCTCCTCAACAAAAGCATTTTCTGCGGACGTTTACCCCTCTTCACTTACTGGGAAATCTCTCTCGTGTGATAGCGGATGCGTGGCTGGTTATTCGTCTCTCATAGACAGCTACTATCCTGAGTCTTTTGGAGATTATCGCAGCACTCCTTTCTCTAGTGGAGGAAGCACAATCTTCTCACCCTCTGCATTGTCCTCTTTGCTGCCTTCTTACTCAAGTGACCCTTCACATTACTTACTGAGGGACTCATGGGAGTCCGCAGGGACGGAGGTGATGGAGGGCTTGTGTGGAGATGCTCTTGCTCCATTACCTCTGTCTACACCCAGTTCTCTGGTGAATCCTGAATCCACCAGCCCAACACAGTTCCGCTCGTCATCCCGAGGGTCCAGCATGGCATCCTCACAGTCCTACTCTCTACACACACTGGACGAAGTCGGCTATCATTCCTCATTTCAGTCACCCTCCACCAGCTTTGCTTCTTCTTCATTCATGGCTGAGCCTGCAAGCAAACTTGCGCCAGTTCTGCCCTCTGAAGACACTGAAAACACCTCTTCAGCCCTGAGCGACGGTCTAGTATGGGGCAAAGAGGACACAGGCAGCACATGGCCACAGTATGAGGTCAGGAGGGCATTCTGA
>TCONS_00016844
GGGCTTATGGTTCAACGAAGCAAACAACCACAAGGACGCGGCACGAACTGTCAGTTGTAAAGAGAGAGAATGCTCGAAAAGAGTGTATCAGGGTGTCCGGGTGAAGCACACTGTAAAAGATCTCCTGGCAGAAAAGAGGTCACGTCAGACAAGCGGCCCGCGCTACACCGGTGTTTCATCTCCTCCAAATCCATTTGTTCAAATGACTGGTTCTCACATGCTCCCGAGTTACTATGGCATGAGAAGACCTTTCATTTCAGAGACAGAGTTCTGCTCCTCAACAAAAGCATTTTCTGCGGACGTTTACCCCTCTTCACTTACTGGGAAATCTCTCTCGTGTGATAGCGGATGCGTGGCTGGTTATTCGTCTCTCATAGACAGCTACTATCCTGAGTCTTTTGGAGATTATCGCAGCACTCCTTTCTCTAGTGGAGGAAGCACAATCTTCTCACCCTCTGCATTGTCCTCTTTGCTGCCTTCTTACTCAAGTGACCCTTCACATTACTTACTGAGGGACTCATGGGAGTCCGCAGGGACGGAGGTGATGGAGGGCTTGTGTGGAGATGCTCTTGCTCCATTACCTCTGTCTACACCCAGTTCTCTGGTGAATCCTGAATCCACCAGCCCAACACAGTTCCGCTCGTCATCCCGAGGGTCCAGCATGGCATCCTCACAGTCCTACTCTCTACACACACTGGACGAAGTCGGCTATCATTCCTCATTTCAGTCACCCTCCACCAGCTTTGCTTCTTCTTCATTCATGGCTGAGCCTGCAAGCAAACTTGCGCCAGTTCTGCCCTCTGAAGACACTGAAAACACCTCTTCAGCCCTGAGCGACGGTCTAGTATGGGGCAAAGAGGACACAGGCAGCACATGGCCACAGTATGAGGTCAGGAGGGCATTCTGA
>TCONS_00016846
GTTCACTAAAGCGGAGCTGGATTTCATGTCTTTGGTATAATGGTCAAATTCAGCTGGAGTTTGGGCATAGACACATTGGTTTCTCTTGGATAGATATAGCTGTGTCCATTTCCATTTTGCATTTCTACTTGTATCTGAGGTATCTGCACTATGGAAACTGAATGCTCGAAAAGAGTGTATCAGGGTGTCCGGGTGAAGCACACTGTAAAAGATCTCCTGGCAGAAAAGAGGTCACGTCAGACAAGCGGCCCGCGCTACACCGGTGTTTCATCTCCTCCAAATCCATTTGTTCAAATGACTGGTTCTCACATGCTCCCGAGTTACTATGGCATGAGAAGACCTTTCATTTCAGAGACAGAGTTCTGCTCCTCAACAAAAGCATTTTCTGCGGACGTTTACCCCTCTTCACTTACTGGGAAATCTCTCTCGTGTGATAGCGGATGCGTGGCTGGTTATTCGTCTCTCATAGACAGCTACTATCCTGAGTCTTTTGGAGATTATCGCAGCACTCCTTTCTCTAGTGGAGGAAGCACAATCTTCTCACCCTCTGCATTGTCCTCTTTGCTGCCTTCTTACTCAAGTGACCCTTCACATTACTTACTGAGGGACTCATGGGAGTCCGCAGGGACGGAGGTGATGGAGGGCTTGTGTGGAGATGCTCTTGCTCCATTACCTCTGTCTACACCCAGTTCTCTGGTGAATCCTGAATCCACCAGCCCAACACAGTTCCGCTCGTCATCCCGAGGGTCCAGCATGGCATCCTCACAGTCCTACTCTCTACACACACTGGACGAAGTCGGCTATCATTCCTCATTTCAGTCACCCTCCACCAGCTTTGCTTCTTCTTCATTCATGGCTGAGCCTGCAAGCAAACTTGCGCCAGTTCTGCCCTCTGAAGACACTGAAAACACCTCTTCAGCCCTGAGCGACGGTCTAGTATGGGGCAAAGAGGACACAGGCAGCACATGGCCACAGTATGAGGTCAGGAGGGCATTCTGATATATTCAGCTGTGAGGATATAAAGCAGATCAGCACCTCTTCCATACACAAGTAAGACCATTAGCTCTGAAAAAGCACCAAATTGTTAGTTTTACTTAACCGAGCTAAGACTTAAAGGGATTCGTATtcctaaaaatgaaaatcctcctatcatttactcaccctctagtTGTTCCTGTTTTggctttattttgtaaatgtatttaaaaaatacaattacattaataaataaagcaaaatagtGCAATATTAATTTATTCTGAAAAGTTAAAGTATGAATCATATGCGTATTTATCTCTACCACTTTTACCAGCTCTACATTAATTACAGGTAAAAATTCCATAACAATGAAAAATAATCCATAACAATTTAAAAGTGTGCAGATTAACTCCATCTCATTCTTAACCTAATATATTGTTTTCATGCATGTTTTACTAATGTATACAAACTGTTGGGACACCATAAATCTGTTTTTCTCccagatacagtgctcagcataattaagttcTTAGTGaataatgtattttggtgcatttaaacaaa
>TCONS_00016847
CACAATGCATGCGTTTTCCTTGCTCaaatctcatgtttttttttctttaattaatttgCAGAATGCTCGAAAAGAGTGTATCAGGGTGTCCGGGTGAAGCACACTGTAAAAGATCTCCTGGCAGAAAAGAGGTCACGTCAGACAAGCGGCCCGCGCTACACCGGTGTTTCATCTCCTCCAAATCCATTTGTTCAAATGACTGGTGAGTTTACAATACAGGTGTATTTAATTCtaaaatgtgcaattttatttttagatttcttcTGTGgtcaattatttaataataataatccaaatgGCTGTGGTCTCTTCAGGTTCTCACATGCTCCCGAGTTACTATGGCATGAGAAGACCTTTCATTTCAGAGACAGAGTTCTGCTCCTCAACAAAAGCATTTTCTGCGGACGTTTACCCCTCTTCACTTACTGGGAAATCTCTCTCGTGTGATAGCGGATGCGTGGCTGGTTATTCGTCTCTCATAGACAGCTACTATCCTGAGTCTTTTGGAGATTATCGCAGCACTCCTTTCTCTAGTGGAGGAAGCACAATCTTCTCACCCTCTGCATTGTCCTCTTTGCTGCCTTCTTACTCAAGTGACCCTTCACATTACTTACTGAGGGACTCATGGGAGTCCGCAGGGACGGAGGTGATGGAGGGCTTGTGTGGAGATGCTCTTGCTCCATTACCTCTGTCTACACCCAGTTCTCTGGTGAATCCTGAATCCACCAGCCCAACACAGTTCCGCTCGTCATCCCGAGGGTCCAGCATGGCATCCTCACAGTCCTACTCTCTACACACACTGGACGAAGTCGGCTATCATTCCTCATTTCAGTCACCCTCCACCAGCTTTGCTTCTTCTTCATTCATGGCTGAGCCTGCAAGCAAACTTGCGCCAGTTCTGCCCTCTGAAGACACTGAAAACACCTCTTCAGCCCTGAGCGACGGTCTAGTATGGGGCAAAGAGGACACAGGCAGCACATGGCCACAGTATGAGGTCAGGAGGGCATTCTGATATATTCAGCTGTGAGGATATAAAGCAGATCAGCACCTCTTCCATACACAA
>TCONS_00016848
gaaaataaataataacttcaaTAACTGTACTCTCATCCTGTAGTCTTGTGAAACTTGATTGCAAGagatcactgtaaaaaatgcaggatttcacacaattaatttatgtaataattgaataaattaacacaacaaatgtaagtggattgaaaataaacaATTACGTTTCCTAAAAACATTTCCTgagttgtgttatttcagctcattttaaataagtcgtttgaacaagcagccaaaataatttttgagtgaattgGATAATatgtaagatatttttttttaaatactgaaaaACTCTTTACTCTTGAAATTTGTTGGCAGGTCATTTGATGCATGCAAATATTTTGTGTGTTAGCCTGTCATGTGCCATTAAGACAGGATTGCATTAGTCAAATAAACGAAATGATCACAGAAAACTGATGATTAATGACAAACTAATCATGTTATGCTGATCTTTTCTTTCTAGGGTGTTTCATCTCCTCCAAATCCATTTGTTCAAATGACTGGTGAGTTTACAATACAGGTGTATTTAATTCtaaaatgtgcaattttatttttagatttcttcTGTGgtcaattatttaataataataatccaaatgGCTGTGGTCTCTTCAGGTTCTCACATGCTCCCGAGTTACTATGGCATGAGAAGACCTTTCATTTCAGAGACAGAGTTCTGCTCCTCAACAAAAGCATTTTCTGCGGACGTTTACCCCTCTTCACTTACTGGGAAATCTCTCTCGTGTGATAGCGGATGCGTGGCTGGTTATTCGTCTCTCATAGACAGCTACTATCCTGAGTCTTTTGGAGATTATCGCAGCACTCCTTTCTCTAGTGGAGGAAGCACAATCTTCTCACCCTCTGCATTGTCCTCTTTGCTGCCTTCTTACTCAAGTGACCCTTCACATTACTTACTGAGGGACTCATGGGAGTCCGCAGGGACGGAGGTGATGGAGGGCTTGTGTGGAGATGCTCTTGCTCCATTACCTCTGTCTACACCCAGTTCTCTGGTGAATCCTGAATCCACCAGCCCAACACAGTTCCGCTCGTCATCCCGAGGGTCCAGCATGGCATCCTCACAGTCCTACTCTCTACACACACTGGACGAAGTCGGCTATCATTCCTCATTTCAGTCACCCTCCACCAGCTTTGCTTCTTCTTCATTCATGGCTGAGCCTGCAAGCAAACTTGCGCCAGTTCTGCCCTCTGAAGACACTGAAAACACCTCTTCAGCCCTGAGCGACGGTCTAGTATGGGGCAAAGAGGACACAGGCAGCACATGGCCACAGTATGAGGTCAGGAGGGCATTCTGA

Function

symbol description
si:ch211-213d14.1 Orthologous to human C11orf53 (chromosome 11 open reading frame 53).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-437 Orthologous to human C11orf53 (chromosome 11 open reading frame 53).

Ensembl:

ensembl_id ENSDARG00000058254

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016845 False 1019 mRNA 0.48 4 17722054 17747776
TCONS_00016844 False 907 mRNA 0.51 5 17722054 17747776
TCONS_00016846 False 1542 mRNA 0.42 5 17728180 17748319
TCONS_00016847 False 1063 mRNA 0.47 3 17730567 17747827
TCONS_00016848 True 1316 mRNA 0.41 2 17743136 17747776

Neighbor

gene id symbol gene type direction distance location
XLOC_008415 adamts15b coding upstream 69247 17621375 ~ 17652807 (+)
XLOC_008414 snx19b coding upstream 232328 17441734 ~ 17489726 (+)
XLOC_008413 rps6kb1b coding upstream 297464 17406920 ~ 17424590 (+)
XLOC_008412 CR848791.3 coding upstream 343991 17376367 ~ 17378063 (+)
XLOC_008411 dre-mir-21-2 coding upstream 348139 17373789 ~ 17373915 (+)
XLOC_008417 si:ch211-213d14.2 coding downstream 4596 17752915 ~ 17757994 (+)
XLOC_008418 zgc:113279 coding downstream 100271 17848590 ~ 17856878 (+)
XLOC_008419 NA coding downstream 137879 17886198 ~ 17936128 (+)
XLOC_008420 CR385077.2 coding downstream 338383 18086702 ~ 18086816 (+)
XLOC_008421 dixdc1a coding downstream 381790 18130109 ~ 18155991 (+)
XLOC_008463 BX663520.1 misc downstream 3503872 21252191 ~ 21252282 (+)
XLOC_008403 BX571762.2 non-coding upstream 801067 16914731 ~ 16920987 (+)
XLOC_008400 BX649487.2 non-coding upstream 892178 16829762 ~ 16829876 (+)
XLOC_008398 CR847990.1 non-coding upstream 1202971 16518967 ~ 16519083 (+)
XLOC_008422 NA non-coding downstream 637271 18385590 ~ 18401208 (+)
XLOC_008423 NA non-coding downstream 1040097 18788416 ~ 18792858 (+)
XLOC_008425 NA non-coding downstream 1407571 19155890 ~ 19157908 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000053_01819436_01827270 CSGR06H11ORF53, CUNH11ORF53, C4H11ORF53 coding CI01000053 null 1818987 ~ 1828591 (-)