XLOC_008421 (dixdc1a)


Basic Information

Item Value
gene id XLOC_008421
gene name dixdc1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 18130109 ~ 18155991 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016858
GAAGAGCAGAGGGGAAAAATATCTCAAAACCAGGGAGAATGAAAAACAGGAGTCGCGTGGTTAGTGGAGATTCAAGAAGGGAGACGGCAGAGCATTCAGAAGCTCTTTACTCCCCTGTTATGGCTCAGAACTGAAAACAGGATTACCTCATGCTTCTTATCATAGAGACACATGCTGTCTCTGCCTGGGATTTTCATCGTTGAGTCTCTGGGAATACCCGAAAAGGCTATTTAATCTGGGTTTACAGCATAAGTGTTGAGGCTGGACTGAAGAAAGAGGACTGGAGGATATTCGCATGGGCTGGAATCTACTGTCCATCATCTTCAATTGACCGAACCGGCAGCTACGTGGACAAGGATTTGGAATGTACACACCCTTTGGACCAGCGCTGTGTTGATGACACTCCGCTTCCTCAAACCCCACGGGTTGGGCCGGATCATAATGGGGGGTTAAAAGGGCAATCAGCATCATGGGAGCCAAACAAATGAAATGCCTCAGTTCATCCAGTCCATCACACACACCTAAGGAGGAGTACATTATTGCCAAATCTGAAGATTCAGGAGAGCTGGTTGGAAACCACACGGAACAACCACAAAGCCTAGAGGATGTGGTGAAATCCTCAGCCACTGATCCATCTCCTGGCCCAGAACATGTTGTGAAAGAGGAAAGCAGCACATGGGAAGAACAGCTATGTGCCCAGCAGGAACAGCTGGAGAAGGAGATGCAGGAGACCAGGAAAATGGTCTCACGGCTTCAGGCTTTACTCCTGCACGGCTCTCTACCCGAGGATGAGCAGACGTCTACTCTGAGCTTTGGGGACACTGCCAGCTCTGAGCAGCAGCTGATTTTAACCCGCAGCCGTCTGGACCAGAGTATGGAGGAGTCTTTAGATCTGAAGAGAGAACTTTTAAGATACAAACAGGAGGCACGCAATCTGCAGGCTGTTAAGGATGCCTTGCAGCAGAGAATGTCTGTACAAGAGGATTCAGTGCTGCAGCTCAAACAAGAGCTGCTCAGATCCAGTATGACCAGAGAGGAGCTCGAGGGACAGAACGTGGAGCTAGAAAGAAAGCTGAGTGAACGGAATAGACTGCTGAGCGAATACAAAAAAGAACTCGGGCAGAAAGACAGACTTCTTCAGCAACAGCAAGCAAAACTGGACGATGCACTGCGCAGAATCAGTGAAAGCTACCACAGGTTGTCAGGCTGTGAGAATAATGGCTACAGTCACATGATGGATACGTCATCGGCTGTGTTCCAACACAGAATGGGGGATGAGCTGCAGCTGGTGCGGGACGCTCTGCGTAGCCTGAGGGACAGTTTCAGTGGTCACGACCCACAGCATCACACACTGGACACACTGGAGCAGGGGGTGGCCAGTCTGGTAGACCGCCTTCACACCTCAGACACCAAAAAAAGACCAGAGAGAAAGGGTTCAACAAGGTCACCTGGAAGAAAAGCCAATCACACAGACCGAGAATCATGGCCATCAACCTCTAAGATCGCTCATTCTCACAGTAGCCCTGTTCTCAGTGCAGCAGCCTCAACCAAAGTACTCTACTACACAGATCGCTCTCTCACACCCTTCCTGGTCAACATCCCTAAAAGGCTGGGGGACGTTACTCTGCAGGACTTCAAGGCGGCTGTGGATCGACATGGCAGTTTCAGATATCACTTCAAATCTCTGGATCCAGAGTTCGGAACGGTGAAAGAAGAGGTGTTTCAGGATGATGCTGTTATACCTGGATGGGAAGGGAAGATCGTTGCATGGGTGGAAGAGGACCATGGAGAAGGAAGATAAAGCATGAGGGTTTCGATTCATTCAGAATGTATGTTTTACCCCACATATACCTCAtccctgaaaaaaacaaaactcagaAGCCTTTTACCTGCCCTAACTGTGAACTCACTCACATTTCATAACAGCAGGTAATGTGTGTAAAACAGAGTATatgtattttaaagaatgaaagaCGACTGAAATGTTAATATAATTCAAATCAGTTTACAGCTAAATACTATTAAAAGGTTTTTCTGTATGTTGAGGTTTTCCAAAAACTATTTCAACAATGCCATCGTGATTAACCAagaaaaaagcttatttatttgtgCAGTAAGCAGTAATAGACATGTTGCATTAGTTGCCAAATTGTGACAAACATACCACAGATTGTGTGCATGTGTTGTCTGTGCCATTTTAGGAGAACATATCATCAGAAGAATATGCGCACATTCACTGTCATATATTTTTCACTAAAATATGCCAACATTTCTTGACTACACTTTCAAAATAAGAGGTGGTAAAAGCAGGGACCATTTTGTTTGTACAAATTTGTAACATTTGAACAAGTATTTCCTTTTGTAAATGATTGTACTTTTCCAatcaagtttgcatgttcataGTGTTTGGTATCTGTGTTGTAAATGCAAATGCTGTTGACACTTGTCCACCTTTTATTAAAGGCATTCTGTGCACAGGA
>TCONS_00016859
CAGGAGAGCTGGTTGGAAACCACACGGAACAACCACAAAGCCTAGAGGATGTGGTGAAATCCTCAGCCACTGATCCATCTCCTGGCCCAGAACATGTTGTGAAAGAGGAAAGCAGCACATGGGAAGAACAGCTATGTGCCCAGCAGGAACAGCTGGAGAAGGAGATGCAGGAGACCAGGAAAATGGTCTCACGGCTTCAGGCTTTACTCCTGCACGGCTCTCTACCCGAGGATGAGCAGACGTCTACTCTGAGCTTTGGGGACACTGCCAGCTCTGAGCAGCAGCTGATTTTAACCCGCAGCCGTCTGGACCAGAGTATGGAGGAGTCTTTAGATCTGAAGGTGACTTAAACttcaaaaaattattatgttattatgtattattattatgttgctcAAACATGAGtttccattttggtgtctgaatgaCAGTGCATTTACACAGACACATGATTTTATGCACAGAactcaataaaaaaaactcaaatttctGTGTTAACGTTTTAAAAGGTATGATAGGAATGTAATGATATTTCAT

Function

symbol description
dixdc1a Enables identical protein binding activity. Acts upstream of or within camera-type eye development; canonical Wnt signaling pathway; and forebrain development. Predicted to be located in cytoplasm and focal adhesion. Predicted to be active in cytosol. Orthologous to human DIXDC1 (DIX domain containing 1).

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0043010 camera-type eye development biological_process
GO:0007275 multicellular organism development biological_process
GO:0030900 forebrain development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005829 cytosol cellular_component
GO:0005925 focal adhesion cellular_component
GO:0030054 cell junction cellular_component
GO:0005737 cytoplasm cellular_component
GO:0042802 identical protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030721-2 Enables identical protein binding activity. Acts upstream of or within camera-type eye development; canonical Wnt signaling pathway; and forebrain development. Predicted to be located in cytoplasm and focal adhesion. Predicted to be active in cytosol. Orthologous to human DIXDC1 (DIX domain containing 1).

Ensembl:

ensembl_id ENSDARG00000025302

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016858 False 2480 mRNA 0.45 15 18130109 18155991
TCONS_00016859 True 537 lncRNA 0.44 4 18140880 18143899

Neighbor

gene id symbol gene type direction distance location
XLOC_008420 CR385077.2 coding upstream 43293 18086702 ~ 18086816 (+)
XLOC_008419 NA coding upstream 193981 17886198 ~ 17936128 (+)
XLOC_008418 zgc:113279 coding upstream 273231 17848590 ~ 17856878 (+)
XLOC_008417 si:ch211-213d14.2 coding upstream 372115 17752915 ~ 17757994 (+)
XLOC_008416 si:ch211-213d14.1 coding upstream 381790 17722054 ~ 17748319 (+)
XLOC_008422 NA coding downstream 229599 18385590 ~ 18401208 (+)
XLOC_008423 NA coding downstream 632425 18788416 ~ 18792858 (+)
XLOC_008424 cadm1b coding downstream 707881 18863872 ~ 18988585 (+)
XLOC_008425 NA coding downstream 999899 19155890 ~ 19157908 (+)
XLOC_008426 NA coding downstream 1026857 19182848 ~ 19187834 (+)
XLOC_008463 BX663520.1 misc downstream 3096200 21252191 ~ 21252282 (+)
XLOC_008412 CR848791.3 non-coding upstream 752046 17376367 ~ 17378063 (+)
XLOC_008411 dre-mir-21-2 non-coding upstream 756194 17373789 ~ 17373915 (+)
XLOC_008403 BX571762.2 non-coding upstream 1209122 16914731 ~ 16920987 (+)
XLOC_008427 BX324206.2 non-coding downstream 1128851 19284842 ~ 19286143 (+)

Expression


Co-expression Network