XLOC_008424 (cadm1b)


Basic Information

Item Value
gene id XLOC_008424
gene name cadm1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 18863872 ~ 18988585 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016861
CAGTGCAGGGTCAGAACCTGGTGACAAATAATGTCTCAGTGGTGGAGGGCGAGACGGCCATCATCAGCTGCCGGGTGAAAAACAACGACGACTCCGTCATCCAACTGCTCAACCCCAACCGGCAGACTATCTACTTCAGAGACGTTAGACCTTTGAAGGACAGTCGGTTTCAGCTGGTAAACTTCTCCGACAACGAGCTCTTGGTGTCCCTGTCCAACGTGTCTCTGTCGGACGAGGGCCGCTACGTGTGTCAACTCTACACGGATCCACCGCAAGAAGCCTACGCCGACATCACTGTACTGGTTCCACCAGGCAACCCAATCTTAGAGTCCCGCGAGGAAATCGTGAGCGAGGGGAATGAGACCGAGATAACCTGCACCGCCATGGGCAGCAAACCTGCTTCCACCATCAAATGGATGAAAGGCGACCAACCACTGCAAGGTGAGGCGACTGTGGAGGAGTTATACGACAGGATGTTCACTGTCACCAGCCGGCTCAGGCTCACCGTCTCTAAGGAGGACGATGGAGTGGCCGTCATCTGCATCATTGACCATCCAGCCGTGAAGGACTTCCAGGCCCAGAAATACCTGGAAGTGCAGTATAAACCAGAAGTGAAGATTGTGGTGGGATTCCCAGAGGGTTTGACCAGAGAAGGAGAAAATCTCGAGCTGACATGCAAAGCTAAAGGAAAACCGCAGCCTCATCAAATTAACTGGCTCAAAGTGGATGATGATTTCCCCTCCCACGCCTTGGTAACTGGCTCTGATCTCTTCATCGAAAACCTTAACAAGTCCTACAACGGAACGTACCGCTGTGTGGCATCTAACTTAGTGGGAGAAGCCTACGATGATTACATCCTTTATGTATACGGTATGTACTTCAACTTAATCTGCTGCTGTAAACAATAATATATGAGAGCAGCGTTTCCCAGACAGCTAAATCTATAGGCTTG
>TCONS_00016862
TGCAGGGTCAGAACCTGGTGACAAATAATGTCTCAGTGGTGGAGGGCGAGACGGCCATCATCAGCTGCCGGGTGAAAAACAACGACGACTCCGTCATCCAACTGCTCAACCCCAACCGGCAGACTATCTACTTCAGAGACGTTAGACCTTTGAAGGACAGTCGGTTTCAGCTGGTAAACTTCTCCGACAACGAGCTCTTGGTGTCCCTGTCCAACGTGTCTCTGTCGGACGAGGGCCGCTACGTGTGTCAACTCTACACGGATCCACCGCAAGAAGCCTACGCCGACATCACTGTACTGGTTCCACCAGGCAACCCAATCTTAGAGTCCCGCGAGGAAATCGTGAGCGAGGGGAATGAGACCGAGATAACCTGCACCGCCATGGGCAGCAAACCTGCTTCCACCATCAAATGGATGAAAGGCGACCAACCACTGCAAGGTGAGGCGACTGTGGAGGAGTTATACGACAGGATGTTCACTGTCACCAGCCGGCTCAGGCTCACCGTCTCTAAGGAGGACGATGGAGTGGCCGTCATCTGCATCATTGACCATCCAGCCGTGAAGGACTTCCAGGCCCAGAAATACCTGGAAGTGCAGTATAAACCAGAAGTGAAGATTGTGGTGGGATTCCCAGAGGGTTTGACCAGAGAAGGAGAAAATCTCGAGCTGACATGCAAAGCTAAAGGAAAACCGCAGCCTCATCAAATTAACTGGCTCAAAGTGGATGATGATTTCCCCTCCCACGCCTTGGTAACTGGCTCTGATCTCTTCATCGAAAACCTTAACAAGTCCTACAACGGAACGTACCGCTGTGTGGCATCTAACTTAGTGGGAGAAGCCTACGATGATTACATCCTTTATGTATACGATTCAAGAGCAGATGGAGCGCCACAGAAAATTGATCATGCCGTCATCGGCGGAGTTGTCGCAGTGGTTGTGTTCGCCATGCTTTGTCTCCTGATTGTTCTTGGCCGATATTTCGCCAGACACAAAGGGACCTACTTCACCCACGAAGCTAAAGGAGCGGATGACGCGGCGGACGCCGACACTGCCATCATCAACGCAGAGGGCGGACACAACAATTCGGATGACAAGAAGGAATACTACATTTAACTGGAACTAGACCTGTTAGCTTCCAGTGCTGAACAGCAAACTGTGGACTGCTGGGTTTGGGAGGAAGGGGTTGTGGGATTCAATCAGGCTGGATTCACACCTGCGCAGCTGAAGAGACGCTGCTGCCATCGAGACGGACGGGGTGTGGGATGGCAGAGCACTAGGAGAGCTCAATTTTAGACCGCTTCACCATCCAACACCTCCTGCTGGGGCCGGTTTTGTTCCGTTTAAACATTTGCTAAGAATTTTGTGCCTTGTTCTGTTCTTACTGAAGTTCCCACTTTCATCAGGACACCCACAAGCTACTGTCTCTCCAATGGTCTGAatccacgttttttttttctctcctttcatttcatttttttaattgctaGCACATCTTAAAGCTCTCTCTCATGCTGTTCTGTCTGCAGGTCTGAAAGAAAGCCGCGCACCAAGTTTCGATGTAAGATTCAGTCACAGAATGATCGCTTGGGTTGTTTTCACGGATTGATTCCAAGTAATTTATTTGGCAAATTGCCTGTTGCTCTCCTTAGTCCCCCAGAGAACGAGTTAGAGATGATAGAaacctttttttctctctcttttttgtgaCCAACAACATTCAGCAGCAGTATTGCATTGTTGCAATATTTATTGGATATACTGTATGTGATTATGATCAGCTTGTGTTgatattagggctgtcaatcgAACACATTACTACTATTATTTCgtttattaaatcattaaaatattaccCAAATTTGGCAATGACATgacaaaatttatattattattattattatatacagctATGGAGAAAATATTAAGACCAATTATGACATTTCttactaaattaaaatgaaaaagttattatttagagcattgttttttttttttttgcttgtttgttttttctttaaaaaaaaagtgctaaatTTTCAGACATGTTGCTAGCCAAATTCATTTATATAGAACATTTCATAAACAGTAATAATtccaagtgctttacataaacaggaataaaagaaacaagtataagaaaataaaaaacaaattataacagtgaataaaagcagtttaaaatgtgttaaacaggttttaaaagaatgaaaaagaaaagaaagacaaatTATAACagtgaataaaagcagtttaaaatgtgttaaacaggttttaaaagaatgaaaaagaaaagaaagacaaatTATAACagtgaataaaagcagtttaaaatg

Function

symbol description
cadm1b Predicted to enable cholesterol 24-hydroxylase activity and heme binding activity. Acts upstream of or within glial cell development and retina development in camera-type eye. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in cleithrum; immature eye; and nervous system. Human ortholog(s) of this gene implicated in breast carcinoma and prostate cancer. Orthologous to human CADM1 (cell adhesion molecule 1).

GO:

id name namespace
GO:0021782 glial cell development biological_process
GO:0007215 glutamate receptor signaling pathway biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0006707 cholesterol catabolic process biological_process
GO:0051234 establishment of localization biological_process
GO:0098655 cation transmembrane transport biological_process
GO:0098657 import into cell biological_process
GO:0098660 inorganic ion transmembrane transport biological_process
GO:0098662 inorganic cation transmembrane transport biological_process
GO:0006810 transport biological_process
GO:0006811 ion transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0031224 intrinsic component of membrane cellular_component
GO:0031226 intrinsic component of plasma membrane cellular_component
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0097060 synaptic membrane cellular_component
GO:0042995 cell projection cellular_component
GO:0044425 obsolete membrane part cellular_component
GO:0043005 neuron projection cellular_component
GO:0098590 plasma membrane region cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0044459 obsolete plasma membrane part cellular_component
GO:0098878 neurotransmitter receptor complex cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0017146 NMDA selective glutamate receptor complex cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0071944 cell periphery cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:1902495 transmembrane transporter complex cellular_component
GO:0008328 ionotropic glutamate receptor complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0098794 postsynapse cellular_component
GO:0099094 ligand-gated cation channel activity molecular_function
GO:0022803 passive transmembrane transporter activity molecular_function
GO:0022824 transmitter-gated ion channel activity molecular_function
GO:0022834 ligand-gated channel activity molecular_function
GO:0022835 transmitter-gated channel activity molecular_function
GO:0022836 gated channel activity molecular_function
GO:0022839 ion gated channel activity molecular_function
GO:0046873 metal ion transmembrane transporter activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0015267 channel activity molecular_function
GO:0015276 ligand-gated ion channel activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function
GO:0033781 cholesterol 24-hydroxylase activity molecular_function
GO:0005216 ion channel activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function
GO:0005261 cation channel activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0004970 ionotropic glutamate receptor activity molecular_function
GO:0004972 NMDA glutamate receptor activity molecular_function
GO:0030594 neurotransmitter receptor activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0008066 glutamate receptor activity molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080327-34 Predicted to enable cholesterol 24-hydroxylase activity and heme binding activity. Acts upstream of or within glial cell development and retina development in camera-type eye. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in cleithrum; immature eye; and nervous system. Human ortholog(s) of this gene implicated in breast carcinoma and prostate cancer. Orthologous to human CADM1 (cell adhesion molecule 1).

Ensembl:

ensembl_id ENSDARG00000042677

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016861 False 952 lncRNA 0.51 6 18863872 18907723
TCONS_00016862 True 2332 mRNA 0.43 8 18863875 18988585

Neighbor

gene id symbol gene type direction distance location
XLOC_008423 NA coding upstream 71014 18788416 ~ 18792858 (+)
XLOC_008422 NA coding upstream 462664 18385590 ~ 18401208 (+)
XLOC_008421 dixdc1a coding upstream 707881 18130109 ~ 18155991 (+)
XLOC_008420 CR385077.2 coding upstream 777056 18086702 ~ 18086816 (+)
XLOC_008419 NA coding upstream 927744 17886198 ~ 17936128 (+)
XLOC_008425 NA coding downstream 167305 19155890 ~ 19157908 (+)
XLOC_008426 NA coding downstream 194263 19182848 ~ 19187834 (+)
XLOC_008427 BX324206.2 coding downstream 296257 19284842 ~ 19286143 (+)
XLOC_008428 BX324206.3 coding downstream 299047 19287632 ~ 19291377 (+)
XLOC_008429 jam3a coding downstream 305159 19293744 ~ 19320615 (+)
XLOC_008463 BX663520.1 misc downstream 2263606 21252191 ~ 21252282 (+)
XLOC_008412 CR848791.3 non-coding upstream 1485809 17376367 ~ 17378063 (+)
XLOC_008435 CR626889.1 non-coding downstream 700290 19688875 ~ 19721754 (+)

Expression


Co-expression Network