XLOC_008436


Basic Information

Item Value
gene id XLOC_008436
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 19752881 ~ 19755818 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016885
ATCTGGCCTGCTCCTCCTCcagcgctgcctgcttttctcttTCATCCACTTTGGTGAACGACATGCCAGTGTTGGCCAGAGATGACACAGCATTGGAGAGTGTGCTCGCCCTACAAAAAAATTCAGGGAGAGATATATTGGGCTTCTCAAAATGCATCCTTTAGAAGTCAATCAATTGTATTCAGTTGTGAGCGAGACGCATGAATGGCCCACCTGCTGGCGGCGGTGGAGTCCTTCACCTTCTTTCCTTCTAATGAAGCCAAGTGTTGCTCCAGGGCATCCAAAAGACTGCTGGGGGCCTGAGAGGAACCACAAACATTTACTTAACCCCGACCAATTCCAAAAAACAGTAAGCATGTCAACTTATATTTGAAATAAGAGTTAAAACAGTGCAGAGGAGTGCAGAAAAGAGTGAGAAAAGTACTTACACAGACTGTAAACTGAAGGTGGACAGAAGGTGGAAAGATAAAGGGAAATACAGAATATAAAGGTGGTTTTGGTCAGACATATAATGCTTAAAGCGAGTAAAAAGCAGCTATTTGCTATGATGTATGGGTGTGATAGTATCATTTGTGCTGAATATATAAGCTTAACATTTGCAATTATGGCTTTGTCCTGCCATGTTATTGTATGTAACAACCCGTTCTCATCAAATACTGCAGCTCAGGCaacattattactataattatgaAACTGTTCGCTCAAGAATATATTCATCATCTTGTGGACATGACTTTGCCAACTGTTTGCAGTGATGGTGGAATCTACATGTATTACAAATGTGGTCCTTTAGTTATATATAaatgctacactgcaaaaaatgcttttcttacttagattttttgtcttgtttctagtccaaatatctacaaattcttaaatcaagaagtattttctagacaagcaaaacatattgtcttgttttaagaaataatctgccaaaatgaagtgagtttttccttaaatcaagcaaaataatctgccaatgggataagcaaaataatcttatcacaaatcgaaaaacaagataaTTTTGCTTATTCCATTGGCAGATTGCctgttaatattttaaatcgTCCACATTGTCCATAAATCTTTTTGACCCTCGTGACAAAGATTTGACTGTATTTGAGTGAGAACGTGTTGCAACATCTACTGTATATTCTTGCTGTAACCAAGGgagtcatttttacattttttctcaaattACTACTGgcatttctccactgagcctgtaACACCTTTATTTGCTGTAGATTGGGATCAGTTAAGACAGAAAAGGTGAGAAATCTTTAGTGACATGCGCATTCTAATGACCTGCATGCATCTTATAAGTCAGAAATGCACTTGTGCAAGGTCAAGTAAGTAAGAAAGAAAGCAGAACAGTCTCCGAAAATCCTCAGAATAGTTAATAGTGCAGAAAGAGAGCAGCTGTGAAAGTCGGAATAAAAGTGCGCTTTTACCTGAGACAGGTCAGGTATGTCCCCGCGGTCTATTCCCacctgctgtgaggcgagaggACAAATGTGTTACACAGCACTCTTTTAATGAAGTCCCCTGCTAACCAGAAATGACACATGAGAATCTCACCTCTGCCACTTTGAGGAACTCCGAGATCCGGGTCATTCGGGTGAGGAATTTCTTGTAAATGTCCAACCCTTCTTTGCACTGAACTTTTTTCATATCAAAGTACTTTTCTGTGAGAGGATGATGAAGCAATGTGTGTTACCAGTCAGCATCATACCGTTATCTGCATGTGTAAGAATTCAAGTGCCCTGTTATGCTATTTTAATAGTTCCTATTTGTTTTTTGATGCCTCCTAAAATATGCAGGGTTCCCATTCTGAGCCAGATGTCCTGACTTTTACTGACTACAAAGCAGAATTTCCATGAGCTAGGCATTTAATCTTTTTATTCTAACTTAAGTATGTCAAGACGTCTGGTCACattcactcccattcatttttagcAATACAAAAAACTTACAGTTCatgtcagaataattagccccactgtattttttttatttttcccaagttctgtttaacggagagaagaattttttcaacacctttcttaacataatagttttaataagagaagaagaagaattgtttggagacacaggttgtcagtgttgctttcataatttgctgcattgaaggttttgtttttatttccctCTATGAGAGCGTAGCTGGACGCACGACAAAAACACGTgtctaagaaacatttttttacccgagagcttttcttaTCTAAAAATGGTAaaatccagatttgccactcgtctcctttttaaaaagaCGCGGCttcagttggtgttgattgttctgtctctacagatttggtaagtgagcgatcagtggtctttgtttattcagatggcaaagttagttcatatcgtcagcagtattcttttagtgtttaaagacagaccttgatcaaaatgatttctaagttactaaagtttaAAGTATGTTAACATTGTTACTGTAAATGCTGCTGtacgagtgtaaacatgtaaacaccgtaATCAAACTCTTAATGTCGTGTaagattttcaccgcattttgtgacaggatatactacacacacacggctttctgacgctacctaccaagtgcatccaaagcctggtttatacttctgcgtcaagtgaccggcgcaggcaacgcacgcagctgtgcatttatacttctgcgcgctgtctctgttggtctgcattaacacttccgaaacgctagttggcagagaggtgtaaatgttcctctgtgtcgagtttcttcacttctgttttgcttttcctgaacacttcctggttgtacaagtgactcaaactcgctcattttgaggcagg
>TCONS_00016886
cttTCATCCACTTTGGTGAACGACATGCCAGTGTTGGCCAGAGATGACACAGCATTGGAGAGTGTGCTCGCCCTACAAAAAAATTCAGGGAGAGATATATTGGGCTTCTCAAAATGCATCCTTTAGAAGTCAATCAATTGTATTCAGTTGTGAGCGAGACGCATGAATGGCCCACCTGCTGGCGGCGGTGGAGTCCTTCACCTTCTTTCCTTCTAATGAAGCCAAGTGTTGCTCCAGGGCATCCAAAAGACTGCTGGGGGCCTGAGAGGAACCACAAACATTTACTTAACCCCGACCAATTCCAAAAAACAACAGGTCAGGTATGTCCCCGCGGTCTATTCCCacctgctgtgaggcgagaggACAAATGTGTTACACAGCACTCTTTTAATGAAGTCCCCTGCTAACCAGAAATGACACATGAGAATCTCACCTCTGCCACTTTGAGGAACTCCGAGATCCGGGTCATTCGGGTGAGGAATTTCTTGTAAATGTCCAACCCTTCTTTGCACTGAACTTTTTTCATATCAAAGTACTTTTCTGTGAGAGGATGATGAAGCAATGTGTGTTACCAGTCAGCATCATACCGTTATCTGCATGTGTAAGAATTCAAGTGCCCTGTTATGCTATTTTAATAGTTCCTATTTGTTTTTTGATGCCTCCTAAAATATGCAGGGTTCCCATTCT

Function

GO:

id name namespace
GO:0004711 ribosomal protein S6 kinase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000097273

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016885 False 2859 lncRNA 0.39 2 19752881 19755818
TCONS_00016886 True 687 lncRNA 0.45 3 19752919 19754803

Neighbor

gene id symbol gene type direction distance location
XLOC_008435 CR626889.1 coding upstream 31127 19688875 ~ 19721754 (+)
XLOC_008434 si:dkey-4p15.5 coding upstream 64492 19681718 ~ 19688389 (+)
XLOC_008433 lim2.3 coding upstream 92124 19646902 ~ 19660757 (+)
XLOC_008432 zgc:77784 coding upstream 150552 19456112 ~ 19602329 (+)
XLOC_008431 acad8 coding upstream 404498 19335646 ~ 19348383 (+)
XLOC_008437 zpld1b coding downstream 27534 19783352 ~ 19793361 (+)
XLOC_008438 si:ch211-229d2.5 coding downstream 42100 19797918 ~ 19803478 (+)
XLOC_008439 alcamb coding downstream 82640 19838458 ~ 19878987 (+)
XLOC_008440 dyrk1ab coding downstream 128424 19884242 ~ 19896816 (+)
XLOC_008441 thap12b coding downstream 144379 19900197 ~ 19908909 (+)
XLOC_008463 BX663520.1 misc downstream 1496373 21252191 ~ 21252282 (+)
XLOC_008428 BX324206.3 non-coding upstream 461504 19287632 ~ 19291377 (+)
XLOC_008427 BX324206.2 non-coding upstream 466738 19284842 ~ 19286143 (+)
XLOC_008426 NA non-coding upstream 565047 19182848 ~ 19187834 (+)
XLOC_008425 NA non-coding upstream 594973 19155890 ~ 19157908 (+)
XLOC_008449 NA non-coding downstream 655474 20411292 ~ 20458876 (+)
XLOC_008454 CR848784.1 non-coding downstream 1141285 20897103 ~ 20901355 (+)
XLOC_008455 NA non-coding downstream 1248915 21004733 ~ 21093616 (+)
XLOC_008456 NA non-coding downstream 1261831 21017649 ~ 21037778 (+)
XLOC_008457 NA non-coding downstream 1408217 21164035 ~ 21164573 (+)

Expression


Co-expression Network