RNA id: TCONS_00016885


Basic Information

Item Value
RNA id TCONS_00016885
length 2859
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id XLOC_008436
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 19752881 ~ 19755818 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCTGGCCTGCTCCTCCTCcagcgctgcctgcttttctcttTCATCCACTTTGGTGAACGACATGCCAGTGTTGGCCAGAGATGACACAGCATTGGAGAGTGTGCTCGCCCTACAAAAAAATTCAGGGAGAGATATATTGGGCTTCTCAAAATGCATCCTTTAGAAGTCAATCAATTGTATTCAGTTGTGAGCGAGACGCATGAATGGCCCACCTGCTGGCGGCGGTGGAGTCCTTCACCTTCTTTCCTTCTAATGAAGCCAAGTGTTGCTCCAGGGCATCCAAAAGACTGCTGGGGGCCTGAGAGGAACCACAAACATTTACTTAACCCCGACCAATTCCAAAAAACAGTAAGCATGTCAACTTATATTTGAAATAAGAGTTAAAACAGTGCAGAGGAGTGCAGAAAAGAGTGAGAAAAGTACTTACACAGACTGTAAACTGAAGGTGGACAGAAGGTGGAAAGATAAAGGGAAATACAGAATATAAAGGTGGTTTTGGTCAGACATATAATGCTTAAAGCGAGTAAAAAGCAGCTATTTGCTATGATGTATGGGTGTGATAGTATCATTTGTGCTGAATATATAAGCTTAACATTTGCAATTATGGCTTTGTCCTGCCATGTTATTGTATGTAACAACCCGTTCTCATCAAATACTGCAGCTCAGGCaacattattactataattatgaAACTGTTCGCTCAAGAATATATTCATCATCTTGTGGACATGACTTTGCCAACTGTTTGCAGTGATGGTGGAATCTACATGTATTACAAATGTGGTCCTTTAGTTATATATAaatgctacactgcaaaaaatgcttttcttacttagattttttgtcttgtttctagtccaaatatctacaaattcttaaatcaagaagtattttctagacaagcaaaacatattgtcttgttttaagaaataatctgccaaaatgaagtgagtttttccttaaatcaagcaaaataatctgccaatgggataagcaaaataatcttatcacaaatcgaaaaacaagataaTTTTGCTTATTCCATTGGCAGATTGCctgttaatattttaaatcgTCCACATTGTCCATAAATCTTTTTGACCCTCGTGACAAAGATTTGACTGTATTTGAGTGAGAACGTGTTGCAACATCTACTGTATATTCTTGCTGTAACCAAGGgagtcatttttacattttttctcaaattACTACTGgcatttctccactgagcctgtaACACCTTTATTTGCTGTAGATTGGGATCAGTTAAGACAGAAAAGGTGAGAAATCTTTAGTGACATGCGCATTCTAATGACCTGCATGCATCTTATAAGTCAGAAATGCACTTGTGCAAGGTCAAGTAAGTAAGAAAGAAAGCAGAACAGTCTCCGAAAATCCTCAGAATAGTTAATAGTGCAGAAAGAGAGCAGCTGTGAAAGTCGGAATAAAAGTGCGCTTTTACCTGAGACAGGTCAGGTATGTCCCCGCGGTCTATTCCCacctgctgtgaggcgagaggACAAATGTGTTACACAGCACTCTTTTAATGAAGTCCCCTGCTAACCAGAAATGACACATGAGAATCTCACCTCTGCCACTTTGAGGAACTCCGAGATCCGGGTCATTCGGGTGAGGAATTTCTTGTAAATGTCCAACCCTTCTTTGCACTGAACTTTTTTCATATCAAAGTACTTTTCTGTGAGAGGATGATGAAGCAATGTGTGTTACCAGTCAGCATCATACCGTTATCTGCATGTGTAAGAATTCAAGTGCCCTGTTATGCTATTTTAATAGTTCCTATTTGTTTTTTGATGCCTCCTAAAATATGCAGGGTTCCCATTCTGAGCCAGATGTCCTGACTTTTACTGACTACAAAGCAGAATTTCCATGAGCTAGGCATTTAATCTTTTTATTCTAACTTAAGTATGTCAAGACGTCTGGTCACattcactcccattcatttttagcAATACAAAAAACTTACAGTTCatgtcagaataattagccccactgtattttttttatttttcccaagttctgtttaacggagagaagaattttttcaacacctttcttaacataatagttttaataagagaagaagaagaattgtttggagacacaggttgtcagtgttgctttcataatttgctgcattgaaggttttgtttttatttccctCTATGAGAGCGTAGCTGGACGCACGACAAAAACACGTgtctaagaaacatttttttacccgagagcttttcttaTCTAAAAATGGTAaaatccagatttgccactcgtctcctttttaaaaagaCGCGGCttcagttggtgttgattgttctgtctctacagatttggtaagtgagcgatcagtggtctttgtttattcagatggcaaagttagttcatatcgtcagcagtattcttttagtgtttaaagacagaccttgatcaaaatgatttctaagttactaaagtttaAAGTATGTTAACATTGTTACTGTAAATGCTGCTGtacgagtgtaaacatgtaaacaccgtaATCAAACTCTTAATGTCGTGTaagattttcaccgcattttgtgacaggatatactacacacacacggctttctgacgctacctaccaagtgcatccaaagcctggtttatacttctgcgtcaagtgaccggcgcaggcaacgcacgcagctgtgcatttatacttctgcgcgctgtctctgttggtctgcattaacacttccgaaacgctagttggcagagaggtgtaaatgttcctctgtgtcgagtttcttcacttctgttttgcttttcctgaacacttcctggttgtacaagtgactcaaactcgctcattttgaggcagg

Function

GO:

id name namespace
GO:0004711 ribosomal protein S6 kinase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018924 lncRNA upstream 31127 19688987 ~ 19721754 (+) False XLOC_008435
TCONS_00018923 lncRNA upstream 44031 19688875 ~ 19708850 (+) False XLOC_008435
TCONS_00016884 lncRNA upstream 44385 19688875 ~ 19708496 (+) False XLOC_008435
TCONS_00018771 lncRNA upstream 44385 19700416 ~ 19708496 (+) True XLOC_008435
TCONS_00016881 lncRNA upstream 97855 19652860 ~ 19655026 (+) True XLOC_008433
TCONS_00016917 lncRNA downstream 655474 20411292 ~ 20458876 (+) False XLOC_008449
TCONS_00018925 lncRNA downstream 668816 20424634 ~ 20458876 (+) True XLOC_008449
TCONS_00016931 lncRNA downstream 1127142 20882960 ~ 20885734 (+) False XLOC_008453
TCONS_00016932 lncRNA downstream 1135501 20891319 ~ 20892743 (+) True XLOC_008453
TCONS_00016933 lncRNA downstream 1141285 20897103 ~ 20901355 (+) True XLOC_008454
TCONS_00016883 mRNA upstream 64492 19682013 ~ 19688389 (+) True XLOC_008434
TCONS_00016882 mRNA upstream 66436 19681718 ~ 19686445 (+) False XLOC_008434
TCONS_00016878 mRNA upstream 92124 19646902 ~ 19660757 (+) False XLOC_008433
TCONS_00016887 mRNA downstream 27534 19783352 ~ 19793361 (+) False XLOC_008437
TCONS_00016888 mRNA downstream 27555 19783373 ~ 19793361 (+) True XLOC_008437
TCONS_00016889 mRNA downstream 42100 19797918 ~ 19803478 (+) True XLOC_008438
TCONS_00016890 mRNA downstream 82640 19838458 ~ 19878987 (+) True XLOC_008439
TCONS_00016891 mRNA downstream 128424 19884242 ~ 19896816 (+) False XLOC_008440
TCONS_00016873 other upstream 412877 19335667 ~ 19340004 (+) True XLOC_008431
TCONS_00016870 other upstream 422938 19324727 ~ 19329943 (+) False XLOC_008430
TCONS_00016857 other upstream 1666065 18086702 ~ 18086816 (+) True XLOC_008420
TCONS_00016851 other upstream 1996114 17755778 ~ 17756767 (+) False XLOC_008417
TCONS_00016838 other upstream 2336274 17406970 ~ 17416607 (+) False XLOC_008413
TCONS_00016899 other downstream 234305 19990123 ~ 19998775 (+) False XLOC_008443
TCONS_00016911 other downstream 599977 20355795 ~ 20361972 (+) True XLOC_008446
TCONS_00016921 other downstream 773462 20529280 ~ 20535484 (+) False XLOC_008450
TCONS_00016934 other downstream 1411324 21167142 ~ 21177049 (+) True XLOC_008458
TCONS_00016935 other downstream 1424276 21180094 ~ 21198286 (+) True XLOC_008459

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU501015 True 6956 lncRNA 0.38 2 CI01000306 9772188 ~ 9785527 (-)