RNA id: TCONS_00016917


Basic Information

Item Value
RNA id TCONS_00016917
length 913
lncRNA type antisense_over
GC content 0.37
exon number 3
gene id XLOC_008449
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 20411292 ~ 20458876 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGGTTTGTTTTTACCCTGGGGAGAAGAAGGCATCTATTATTCTGTCTCCTATGGGGTTCATTGCCAGCTCCTTTATGGCTCCAAAATCCTGTGGACTATTTGAGAATAAAACAACATATGAGCAGGACAGACGCCAGCAAGAGTCCTCAGGGTCGTGTAAAGAAGGAAGAAGGGTGAAATCAGCAGTGATGTAGTGATGACAGAGACAAGCCTGACTTCCCGTACTCTGCTTTCAAGGAAACAAGAAAAGGGAAGGACGACGGAATTCCCACTGTTGATCAGCCACAaagtagatgttttttttttaaatgctttgtcAATGATCGGTGGATTGTTTGATTATTAACACCGGCTAAACTTCGGAATGCAAAAGTCTCTTAAAGAGATTCACCCAGAGTTCAATTAGTTTTTAAAGTCCTCCTAAACGTATTCCCGAAAGAACTGAGTGGTTTATTCTGCACTACTTAAGGCTGATCAATTCCAATTCATCTGATTTACATTATATTTCTACATTTTGTCAAGTTTGTtccctattatttatttttttaacccttgtgtgctgttggggggtgttgtcatccactctggggtgattttgagtcttaatttggccataattTGTCCTATGTTCCAGCAAATGGAGTGATCTTTGGTGACAAAACTTATTTTAACCCATATTTTgggaaaacactttgaatttttttttttttaaacgctaCAATACTctgcaaatttactacccttttgttattttTGAAGCTGTTTTTCCCTTTGATTTACATTATATTGACTTGTGAGATTCCCATGACACCAAATAATTATGCAATCTTGGTTGTTGGTaattttccctgttgggaagatgtaaaatctgtcatttttactgttggtcatcagttgcagtgcaagaaagaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016885 lncRNA upstream 655474 19752881 ~ 19755818 (+) False XLOC_008436
TCONS_00016886 lncRNA upstream 656489 19752919 ~ 19754803 (+) True XLOC_008436
TCONS_00018924 lncRNA upstream 689538 19688987 ~ 19721754 (+) False XLOC_008435
TCONS_00018923 lncRNA upstream 702442 19688875 ~ 19708850 (+) False XLOC_008435
TCONS_00016884 lncRNA upstream 702796 19688875 ~ 19708496 (+) False XLOC_008435
TCONS_00016931 lncRNA downstream 424084 20882960 ~ 20885734 (+) False XLOC_008453
TCONS_00016932 lncRNA downstream 432443 20891319 ~ 20892743 (+) True XLOC_008453
TCONS_00016933 lncRNA downstream 438227 20897103 ~ 20901355 (+) True XLOC_008454
TCONS_00018926 lncRNA downstream 545857 21004733 ~ 21093616 (+) True XLOC_008455
TCONS_00018927 lncRNA downstream 558773 21017649 ~ 21037778 (+) True XLOC_008456
TCONS_00016914 mRNA upstream 5496 20403084 ~ 20405796 (+) False XLOC_008448
TCONS_00016915 mRNA upstream 5772 20403130 ~ 20405520 (+) False XLOC_008448
TCONS_00016916 mRNA upstream 5773 20403903 ~ 20405519 (+) True XLOC_008448
TCONS_00016913 mRNA upstream 16043 20364595 ~ 20395249 (+) True XLOC_008447
TCONS_00016912 mRNA upstream 16527 20363859 ~ 20394765 (+) False XLOC_008447
TCONS_00016918 mRNA downstream 70321 20529197 ~ 20541185 (+) False XLOC_008450
TCONS_00016919 mRNA downstream 70381 20529257 ~ 20535245 (+) False XLOC_008450
TCONS_00016920 mRNA downstream 70392 20529268 ~ 20535518 (+) False XLOC_008450
TCONS_00016922 mRNA downstream 71773 20530649 ~ 20540616 (+) True XLOC_008450
TCONS_00016923 mRNA downstream 84894 20543770 ~ 20643827 (+) False XLOC_008451
TCONS_00016911 other upstream 49320 20355795 ~ 20361972 (+) True XLOC_008446
TCONS_00016899 other upstream 412517 19990123 ~ 19998775 (+) False XLOC_008443
TCONS_00016873 other upstream 1071288 19335667 ~ 19340004 (+) True XLOC_008431
TCONS_00016870 other upstream 1081349 19324727 ~ 19329943 (+) False XLOC_008430
TCONS_00016857 other upstream 2324476 18086702 ~ 18086816 (+) True XLOC_008420
TCONS_00016921 other downstream 70404 20529280 ~ 20535484 (+) False XLOC_008450
TCONS_00016934 other downstream 708266 21167142 ~ 21177049 (+) True XLOC_008458
TCONS_00016935 other downstream 721218 21180094 ~ 21198286 (+) True XLOC_008459
TCONS_00016937 other downstream 793315 21252191 ~ 21252282 (+) True XLOC_008463
TCONS_00016942 other downstream 793703 21252579 ~ 21261192 (+) False XLOC_008464

Expression Profile

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