XLOC_008450 (tnfaip1)


Basic Information

Item Value
gene id XLOC_008450
gene name tnfaip1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 20529197 ~ 20541185 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016918
TAGCCAATGGGTGGCAGTAGATCATTAACACGGTTTAACCTGTTGCTGTTGATCTTTCAACGAAGAAGAGCCACCCATCACATTTGTTAGCCATCGCCCTGAAGGTAGATGTGAAAGGTATTTTCCCTGTTTTTAAATGGTCTGATAGACCTGTTTATgcgtttctttttcaaatatggtTGAAGTTAAACAGCGGAGTTGAACAACTGTCGACTTCAGTTACTCGCCGACGAGTTATACTGCGGCAGAGCGGTTAATGTGTAGCATGTAGGTTTGGCATCACGATCAGCCTGGCCAGCAGCATTCACCACGGCAGGGGAAATCAGACCCATCGTGTGCAGGGTGGTTATCTACCTACAGAGGGACATGTCAGGAGAGAGCTGCCTGCACCAGCTTCAGCCACACACCGGGCCCATCCTGCCAGTCTCTTCAGTGGGCTGCCCCAAGACTAACACCTGCACCTACCGTGGTGTGACCGGAAATAAGTACGTTCAGCTCAATGTTGGTGGAAATCTGTACTACTCCACACTGCAGGTGCTCACTAGACAGGACACCCTGCTGAGATCCATGTTCAGCGGCAAGATGGAGGTGCTCACAGATAAGGAAGgttggaTCCTAATAGATCGCTGTGGGAAACACTTTGGCTCCATTCTCAGCTATCTCCGTGATGGATTTGTGAATTTGCCAAAAAGCAGACAGAGCATCATGGAGCTCCTAGCAGAGGCCAAGTATTACCAGATTCAGGGCTTGATAGACTTGTGCCAGAAGGAGCTACAGGACAATAAGGAAAAGGCTCTGTGTGTAATCCCGGTCATAACATCTCCTAAAGAGGAGGAGAGACTGATACAAGCATGTGTGAGGCCTGTTGTAAAGCTTCTATACAATCGAGGAAATAACAAATATTCCTATACAAGCAACTCTGATGACAACCTGCTCAAGAATATCGAGCTGTTTGAGAAGCTGTCTCTGAGCTACAGCGGTCGTGTGCTCTTCATTAAAGATGTAATTGGAGATGAAATTTGCTGCTGGTCTTTTTACGGACAGCACCGCAAACTTGCTGaggtctgctgcacatccatcgTTTATGCTACTGAGAAGAAGCAAACAAAGGTTGAGTTTCCAGAAGCACGAATCTACGAGGAGACGCTAAACGCCTTGCTCTATGAGACTCTCCCCATCCCAGATTACTCTCTGCTAGAAGCCACCCGCAGACGCACCAATTGCTGCTCCCACAGTGAAGAGGAGGAGGCCGTGGAGCTGAGAGAGCGTGTGCGCCGCATCCACATTAAACGATACAGCACATATGACGACAGACCACTTGGACATTAGCCCAACTGTGAGGCTTCCAAGACACTTTATAAATATATCCTTTTAACCAGTGCCTCTTTTGTAGATCTGTGGAGAACACTAGATCTCAAGCACAGTTTAACCACTCTTTAACTTCACTACCGGAACAGAttactgcttttttatttatctctttttcctttttttatatcGTAGGGAGCTTGACAATCAAAGCTTTTGATGAAATGCTGCTTGAACTTTGCGTGAACATAACAGAACAAGGATGATAATGAATTCGCATCAGTTCCTAACttttaacttatttacctcattttttgttattttaggagAAAAGTTTGTTATTAAATTGTGATTACTAATCTAATCAGAGAATGTTTTGCCAGGATGAGTCTGCCAAGTACATCAGTTGAGTTCTACTAACCATACAGGATCATATACTACATTTCAATCTTGCATTATGCCTATATTAATCATCCTTACTGTGATTTTAAGATGATTAGTGTGTATATTATATGGTATTGGGTGTGTTACATTTGGGGAAATAATTGCAGTGTATGATTTTAAGAGTGTGACAATGTGATGCCCTCAGAATGTGCttttgaatgaatgactgaacgagA
>TCONS_00016919
CGAAGAAGAGCCACCCATCACATTTGTTAGCCATCGCCCTGAAGTTAAACAGCGGAGTTGAACAACTGTCGACTTCAGTTACTCGCCGACGAGTTATACTGCGGCAGAGCGGTTAATGTGTAGCATGTAGGTTTGGCATCACGATCAGCCTGGCCAGCAGCATTCACCACGGCAGGGGAAATCAGACCCATCGTGTGCAGGGTGGTTATCTACCTACAGAGGGACATGTCAGGAGAGAGCTGCCTGCACCAGCTTCAGCCACACACCGGGCCCATCCTGCCAGTCTCTTCAGTGGGCTGCCCCAAGACTAACACCTGCACCTACCGTGGTGTGACCGGAAATAAGTACGTTCAGCTCAATGTTGGTGGAAATCTGTACTACTCCACACTGCAGGTGCTCACTAGACAGGACACCCTGCTGAGATCCATGTTCAGCGGCAAGATGGAGGTGCTCACAGATAAGGAAGgttggaTCCTAATAGATCGCTGTGGGAAACACTTTGGCTCCATTCTCAGCTATCTCCGTGATGGATTTGTGAATTTGCCAAAAAGCAGACAGAGCATCATGGAGCTCCTAGCAGAGGCCAAGTATTACCAGATTCAGGGCTTGATAGACTTGTGCCAGAAGGAGCTACAGGACAATAAGGAAAAGGCTCTGTGTGTAATCCCGGTCATAACATCTCCTAAAGAGGAGGAGAGACTGATACAAGCATGTGTGAGGCCTGTTGTAAAGCTTCTATACAATCGAGGAAATAACAAATATTCC
>TCONS_00016920
CACCCATCACATTTGTTAGCCATCGCCCTGAAGTTAATGTGTAGCATGTAGGTTTGGCATCACGATCAGCCTGGCCAGCAGCATTCACCACGGCAGGGGAAATCAGACCCATCGTGTGCAGGGTGGTTATCTACCTACAGAGGGACATGTCAGGAGAGAGCTGCCTGCACCAGCTTCAGCCACACACCGGGCCCATCCTGCCAGTCTCTTCAGTGGGCTGCCCCAAGACTAACACCTGCACCTACCGTGGTGTGACCGGAAATAAGTACGTTCAGCTCAATGTTGGTGGAAATCTGTACTACTCCACACTGCAGGTGCTCACTAGACAGGACACCCTGCTGAGATCCATGTTCAGCGGCAAGATGGAGGTGCTCACAGATAAGGAAGgttggaTCCTAATAGATCGCTGTGGGAAACACTTTGGCTCCATTCTCAGCTATCTCCGTGATGGATTTGTGAATTTGCCAAAAAGCAGACAGAGCATCATGGAGCTCCTAGCAGAGGCCAAGTATTACCAGATTCAGGGCTTGATAGACTTGTGCCAGAAGGAGCTACAGGACAATAAGGAAAAGGCTCTGTGTGTAATCCCGGTCATAACATCTCCTAAAGAGGAGGAGAGACTGATACAAGCATGTGTGAGGCCTGTTGTAAAGCTTCTATACAATCGAGGAAATAACAAATATTCCTATACAAGCAACTCTGATGACAACCTGCTCAAGAATATCGAGCTGTTTGAGAAGCTGTCTCTGAGCTACAGCGGTCGTGTGCTCTTCATTAAAGATGTAATTGGAGATGAAATTTGCTGCTGGTCTTTTTACGGACAGCACCGCAAACTTGCTGaggtctgctgcacatccatcgTTTATGCTACTG
>TCONS_00016921
TTGTTAGCCATCGCCCTGAAGGTAGATGTGAAAGGTATTTTCCCTGTTTTTAAATGGTCTGATAGACCTGTTTATgcgtttctttttcaaatatggtTGAAGTTAAACAGCGGAGTTGAACAACTGTCGACTTCAGTTACTCGCCGACGAGTTATACTGCGGCAGAGCGGTTAATGTGTAGCATGTAGGTTTGGCATCACGATCAGCCTGGCCAGCAGCATTCACCACGGCAGGGGAAATCAGACCCATCGTGTGCAGGGTGGTTATCTACCTACAGAGGGACATGTCAGGAGAGAGCTGCCTGCACCAGCTTCAGCCACACACCGGGCCCATCCTGCCAGTCTCTTCAGTGGGCTGCCCCAAGACTAACACCTGCACCTACCGTGGTGTGACCGGAAATAAGTACGTTCAGCTCAATGTTGGTGGAAATCTGTACTACTCCACACTGCAGGTGCTCACTAGACAGGACACCCTGCTGAGATCCATGTTCAGCGGCAAGATGGAGGTGCTCACAGATAAGGAAGgttggaTCCTAATAGATCGCTGTGGGAAACACTTTGGCTCTGTGTGTAATCCCGGTCATAACATCTCCTAAAGAGGAGGAGAGACTGATACAAGCATGTGTGAGGCCTGTTGTAAAGCTTCTATACAATCGAGGAAATAACAAATATTCCTATACAAGCAACTCTGATGACAACCTGCTCAAGAATATCGAGCTGTTTGAGAAGCTGTCTCTGAGCTACAGCGGTCGTGTGCTCTTCATTAAAGATGTAATTGGAGATGAAATTTGCTGCTGGTCTTTTTACGGACAGCACCGCAAACTTGCT
>TCONS_00016922
CATGTCAGGAGAGAGCTGCCTGCACCAGCTTCAGCCACACACCGGGCCCATCCTGCCAGTCTCTTCAGTGGGCTGCCCCAAGACTAACACCTGCACCTACCGTGGTGTGACCGGAAATAAGTACGTTCAGCTCAATGTTGGTGGAAATCTGTACTACTCCACACTGCAGGTGCTCACTAGACAGGACACCCTGCTGAGATCCATGTTCAGCGGCAAGATGGAGGTGCTCACAGATAAGGAAGgttggaTCCTAATAGATCGCTGTGGGAAACACTTTGGCTCCATTCTCAGCTATCTCCGTGATGGATTTGTGAATTTGCCAAAAAGCAGACAGAGCATCATGGAGCTCCTAGCAGAGGCCAAGTATTACCAGATTCAGGGCTTGATAGACTTGTGCCAGAAGGAGCTACAGGACAATAAGGAAAAGGCTCTGTGTGTAATCCCGGTCATAACATCTCCTAAAGAGGAGGAGAGACTGATACAAGCATGTGTGAGGCCTGTTGTAAAGCTTCTATACAATCGAGGAAATAACAAATATTCCTATACAAGCAACTCTGATGACAACCTGCTCAAGAATATCGAGCTGTTTGAGAAGCTGTCTCTGAGCTACAGCGGTCGTGTGCTCTTCATTAAAGATGTAATTGGAGATGAAATTTGCTGCTGGTCTTTTTACGGACAGCACCGCAAACTTGCTGaggtctgctgcacatccatcgTTTATGCTACTGAGAAGAAGCAAACAAAGGTTGAGTTTCCAGAAGCACGAATCTACGAGGAGACGCTAAACGCCTTGCTCTATGAGACTCTCCCCATCCCAGATTACTCTCTGCTAGAAGCCACCCGCAGACGCACCAATTGCTGCTCCCACAGTGAAGAGGAGGAGGCCGTGGAGCTGAGAGAGCGTGTGCGCCGCATCCACATTAAACGATACAGCACATATGACGACAGACCACTTGGACATTAGCCCAACTGTGAGGCTTCCAAGACACTTTAT

Function

symbol description
tnfaip1 Predicted to contribute to ubiquitin-protein transferase activity. Predicted to be involved in negative regulation of Rho protein signal transduction; proteasome-mediated ubiquitin-dependent protein catabolic process; and protein ubiquitination. Predicted to act upstream of or within protein homooligomerization. Predicted to be part of Cul3-RING ubiquitin ligase complex. Orthologous to human TNFAIP1 (TNF alpha induced protein 1).

GO:

id name namespace
GO:0035024 negative regulation of Rho protein signal transduction biological_process
GO:0051260 protein homooligomerization biological_process
GO:0016567 protein ubiquitination biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0031463 Cul3-RING ubiquitin ligase complex cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5610 Predicted to contribute to ubiquitin-protein transferase activity. Predicted to be involved in negative regulation of Rho protein signal transduction; proteasome-mediated ubiquitin-dependent protein catabolic process; and protein ubiquitination. Predicted to act upstream of or within protein homooligomerization. Predicted to be part of Cul3-RING ubiquitin ligase complex. Orthologous to human TNFAIP1 (TNF alpha induced protein 1).

Ensembl:

ensembl_id ENSDARG00000041565

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016918 False 1928 mRNA 0.44 7 20529197 20541185
TCONS_00016919 False 765 mRNA 0.50 6 20529257 20535245
TCONS_00016920 False 873 mRNA 0.49 6 20529268 20535518
TCONS_00016921 False 827 nonsense_mediated_decay 0.48 6 20529280 20535484
TCONS_00016922 True 994 mRNA 0.49 6 20530649 20540616

Neighbor

gene id symbol gene type direction distance location
XLOC_008449 NA coding upstream 70321 20411292 ~ 20458876 (+)
XLOC_008448 cox7a1 coding upstream 123401 20403084 ~ 20405796 (+)
XLOC_008447 supt5h coding upstream 133948 20363859 ~ 20395249 (+)
XLOC_008446 il15l coding upstream 165411 20352123 ~ 20363786 (+)
XLOC_008445 plekhg2 coding upstream 177152 20281305 ~ 20352045 (+)
XLOC_008451 sgsm2 coding downstream 2585 20543770 ~ 20643827 (+)
XLOC_008452 aldh3a1 coding downstream 258758 20799943 ~ 20809124 (+)
XLOC_008453 ulk2 coding downstream 301976 20843161 ~ 20894776 (+)
XLOC_008454 CR848784.1 coding downstream 355918 20897103 ~ 20901355 (+)
XLOC_008455 NA coding downstream 463548 21004733 ~ 21093616 (+)
XLOC_008463 BX663520.1 misc downstream 711006 21252191 ~ 21252282 (+)
XLOC_008436 NA non-coding upstream 773379 19752881 ~ 19755818 (+)
XLOC_008435 CR626889.1 non-coding upstream 807443 19688875 ~ 19721754 (+)
XLOC_008428 BX324206.3 non-coding upstream 1237820 19287632 ~ 19291377 (+)
XLOC_008427 BX324206.2 non-coding upstream 1243054 19284842 ~ 19286143 (+)
XLOC_008456 NA non-coding downstream 476464 21017649 ~ 21037778 (+)
XLOC_008457 NA non-coding downstream 622850 21164035 ~ 21164573 (+)
XLOC_008458 CR626907.1 non-coding downstream 625957 21167142 ~ 21177049 (+)

Expression


Co-expression Network