CI01000053_06625828_06650150


Basic Information

Item Value
gene id CI01000053_06625828_06650150
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 6625828 ~ 6650150 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000053_06625828_06650150.mRNA
TCAGACAGGTGTGATTACGTCTACGTGAATGGCAAAGAGATGAGGGGACGGGTCCGAATGCTGGTGAACTTCACATATGGTTACCTGAAGGCTCAGCTGGAGGTGAAGGTCTGGATTCCAAAACTGCCCCTGCACATCGAAGTTTCAGATACTGAACTCAGTCAGATAAAAGGCTGGAGGATTCCCGTAAACAGTAATGCCCAGAGGTCGACACGGGACAGCGAAGATGATGACGATGAAGAGAGGAGAGGAAAGACATGTACTCTACAGTACCAGAGGGCCATGGTGCGTGTGCTCACACATTTTGTGGCCGATTCCTCTGAGACTCGAGGTCAGGTGGCCCACATGCTAGGCAGTGATTGGCAGGTGGATATTACGGAGCTAGTCTGGGACTTCCTGAAAGTAGAGAATCCCCGAATCGCCAGGCTAAGAGAGGGACGTGTTTTGGAGGGCATGGACACAGGCATGACCAGCATTCAGGTTCTGTCTCCACTGTCAGACTCTATCCTGGCAGAGAAGACGGTGAGGGTTGTGGATGATCGAGTGACCATCACTGAACTGGGGCTGCAGTTGGTCAGTGGTCTCACACTCAGCCTGCAGCTCAGCACAGGAAGTAACCGAGCCATCAGTGCCACAGCAACCACACAGGAAGTGCTCAGCAATCCTAAACAGGAGGCGCTAATCAGTGCTTGGCTGCAGTTCAGCGACGGCTCCATGGCTCCTCTGGACCTGTACAACCCTGAGCACTTTGTTCTGACTGCTACCTCTCTGGATGAGGATGTAGTGTCCATACGGCAGGACGCTGCAGGCCAGTGGCCGGTTATTTCTGCACGAGCCGAGGGGCAAGGTCTGCTGGTGCATGTAGAAATGACGGTATGTGAAGTGTGCCAGAAATTTAAGCGCCGAAGTGTCCTGGCGGCCGGAAACTGCAACATCCGTGTGAAGTTCGGTCATAGCGAAAGCGCCTTAAGACCGGGCGACTACGGCCAGGATGGAGAGGACATGGACAACAGACCAGGTGACCGCAGACAGAACCCGTCTCTCCCGGACAGGACCGGGATGGACAACCACTACTATGGAAGCTCTATCTCAGACATGGAGGATGGTAACATGAGACGAATCACCACCACGACCAAAACAGCCATCATCAGACGACCAGGTGGAGACAAGCTCTCAGACGATGGGAGCCAGTTGCCCGGCATTCCAATCGATTTCTCGGACTTCCCCGCTCAAGTGGACCTTCCCCGAGGACATAACGTGGATGAGGACGACCTTCAAATACCTCATGGACTTACTGACCTTGAAATTGGGATGTACGCTTTGTTAGGTGTCTTCTGCTTGGCTATTCTGGTCTTCCTCATCAATTGCATCTCATACACTCTCAAGTACCAACACAAGGAGATGTCAATCGAGGGCCAGGAGAGCATGAACCACGCTCACGACTGGGTGTGGCTGGGAAATGACGCAGAACTTCTGGAGAGCCACGTGAGTTTGTCTCCGCAGACCGATGAGCACATCACCATTATGGACTCTAGCTTAGGCGGGTTAGAAGAAGGGAGCCACCTTCTCAATGGTGGTTCTTTGCAGAAGAACGTTCATGGCCAGGTGCACAGAGGAGCCGACACCGCTACCGTCTGCACAGGGAAAGACAGCAAAGGCGATTCGCCGACAACCAAAAGGAAACGCGTGAAGTTTACCACATTCACCACCATCCCAGTGGAAAGTGTTAGTCCGGCAAAGGAAAATTTGGGAGTCGATCCTGACGATGACATTAAGTGGGTATGTCAGGATGTTGAACTTGGCGACTCTAAGGAACTACGAAACTACATGGAGCGGCTAAACGAT

Function

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000053_06625828_06650150.mRNA True 1845 mRNA 0.53 4 6625828 6650150

Neighbor

gene id symbol gene type direction distance location
CI01000053_06554488_06572369 NA coding upstream 53434 6552524 ~ 6572394 (+)
CI01000053_06429917_06431273 NA coding upstream 193911 6429917 ~ 6431917 (+)
CI01000053_06300198_06301049 NA coding upstream 323793 6300198 ~ 6302035 (+)
CI01000053_06286516_06286956 NA coding upstream 338839 6286421 ~ 6286989 (+)
CI01000053_06276837_06278780 NA coding upstream 347048 6276717 ~ 6278780 (+)
CI01000053_06725452_06758944 NA coding downstream 75302 6725452 ~ 6758944 (+)
CI01000053_06851564_06854586 NA coding downstream 201319 6851469 ~ 6854600 (+)
CI01000053_06855860_06878353 NA coding downstream 205614 6855764 ~ 6878839 (+)
G229012 NA non-coding upstream 1147 6624101 ~ 6624681 (+)
G228887 NA non-coding upstream 275709 6278806 ~ 6350119 (+)
G228916 NA non-coding upstream 309632 6314640 ~ 6316196 (+)
G228901 NA non-coding upstream 316479 6307340 ~ 6309349 (+)
G228785 NA non-coding upstream 382876 6242311 ~ 6242952 (+)
G229026 NA non-coding downstream 7252 6657402 ~ 6657608 (+)
G229028 NA non-coding downstream 8414 6658564 ~ 6659723 (+)
G228909 NA non-coding downstream 9744 6659894 ~ 6660095 (+)
G228899 NA non-coding downstream 10112 6660262 ~ 6662409 (+)
G229059 NA non-coding downstream 135868 6786018 ~ 6786360 (+)
CI01000053_05471449_05512831 LRRC75B other upstream 1112754 5471449 ~ 5513074 (+)
G228257 NA other upstream 1247379 5375553 ~ 5378449 (+)
G227317 NA other upstream 2210235 4414951 ~ 4415593 (+)
G226399 NA other upstream 2928299 3620798 ~ 3697529 (+)
G226347 NA other upstream 3350917 3272374 ~ 3274911 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_035835 TMEM132C coding NC_007119.7 CM002892.2 35212233 ~ 35761613 (+)