Gene
RNA
| Item | Value |
|---|---|
| gene id | G228887 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000053 |
| NCBI id | null |
| chromosome length | 7014373 |
| location | 6278806 ~ 6350119 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU259736 | True | 782 | lncRNA | 0.40 | 2 | 6278806 | 6350119 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000053_06276837_06278780 | NA | coding | upstream | 26 | 6276717 ~ 6278780 (+) |
| CI01000053_06238623_06241104 | NA | coding | upstream | 36940 | 6237556 ~ 6241866 (+) |
| CI01000053_06182140_06229627 | NA | coding | upstream | 48777 | 6182140 ~ 6230029 (+) |
| CI01000053_06157492_06158741 | NA | coding | upstream | 119209 | 6157492 ~ 6159597 (+) |
| CI01000053_06148375_06153273 | ARPC5LA, ARPC5LB, ARPC5L, ARPC5 | coding | upstream | 125001 | 6147682 ~ 6153805 (+) |
| CI01000053_06429917_06431273 | NA | coding | downstream | 79798 | 6429917 ~ 6431917 (+) |
| CI01000053_06554488_06572369 | NA | coding | downstream | 202405 | 6552524 ~ 6572394 (+) |
| CI01000053_06625828_06650150 | NA | coding | downstream | 275709 | 6625828 ~ 6650150 (+) |
| CI01000053_06725452_06758944 | NA | coding | downstream | 375333 | 6725452 ~ 6758944 (+) |
| CI01000053_06851564_06854586 | NA | coding | downstream | 501350 | 6851469 ~ 6854600 (+) |
| G228785 | NA | non-coding | upstream | 35854 | 6242311 ~ 6242952 (+) |
| G228852 | NA | non-coding | upstream | 139878 | 6133947 ~ 6138928 (+) |
| G228850 | NA | non-coding | upstream | 149883 | 6128695 ~ 6128923 (+) |
| G228849 | NA | non-coding | upstream | 150214 | 6128283 ~ 6128592 (+) |
| G228845 | NA | non-coding | upstream | 154054 | 6124498 ~ 6124752 (+) |
| G229012 | NA | non-coding | downstream | 273982 | 6624101 ~ 6624681 (+) |
| G229026 | NA | non-coding | downstream | 307283 | 6657402 ~ 6657608 (+) |
| G229028 | NA | non-coding | downstream | 308445 | 6658564 ~ 6659723 (+) |
| G228909 | NA | non-coding | downstream | 309775 | 6659894 ~ 6660095 (+) |
| G228899 | NA | non-coding | downstream | 310143 | 6660262 ~ 6662409 (+) |
| CI01000053_05471449_05512831 | LRRC75B | other | upstream | 765732 | 5471449 ~ 5513074 (+) |
| G228257 | NA | other | upstream | 900357 | 5375553 ~ 5378449 (+) |
| G227317 | NA | other | upstream | 1863213 | 4414951 ~ 4415593 (+) |
| G226399 | NA | other | upstream | 2581277 | 3620798 ~ 3697529 (+) |
| G226347 | NA | other | upstream | 3003895 | 3272374 ~ 3274911 (+) |
