XLOC_009843 (hacl1)


Basic Information

Item Value
gene id XLOC_009843
gene name hacl1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 20167811 ~ 20194385 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019650
AGCACAGAAGAAGAGCTGCAGGACGGTGAGCACTGGATGTTTGTGTTAGTGAGTGAAATGAATCAGTTGTAAAAGTAGTTATGGATGAAGTTACTGGAGCTCAACTCATCGCTGCGGCGCTGAAAGATCAGAATGTGGAGTACATGTTTGGCATTGTTGGTGTGCCTATCATTGAGGTGGCCATGGCTGCGCAAGCGGCTGGCATCAAGTATGTTGGCATGCGCAATGAACAAGCAGCCTGCTACGCTGCATCTGCCATTGGATATTTGACTGGACGgcCAGCTGTCTGTCTAGTGGTGTCTGGGCCTGGCCTGATTCATGCGCTAGGAGGAATGGCTAATGCTAACGTGAACTGCTGgcCTGTCATTGTGCTAGGTGGCTCATCCGATAGAAACCAAGAAACCACAGGAGCGTTTCAGGAGTTCCCTCAGGTTGAAGCTTGTCGTTTGTATAGCAAGTTTTCTGCTCGACCCAGCAGCCTTGAGATGATCCCGGCTGTAGTTGAAAAAGCTGTAAGGAGCAGTATTTATGGCCGTCCAGGAGCGTGCTACATTGACATAGCTGGAGACATGGTTAATGCCAAAATAGACCGGGCCACTGTCAGGTTTGTTTCCTGTTGTCCCGCTCCTCCTTTGAGTCAGGCTGACTGCAGGGAGATCACACAGGCTGTCAGGCTACTCAAAACATCTCAAAGTCCTCTGATCATCATTGGCAAAGGTGCTGCGTATGCCAGGGCAGAGGAGGTGGTCAGGGAACTGGTGGAGGTCACTGGGATACCCTTTCTTCCCACACCAATGGGGAAAGGAGTCCTGCCAGATGACCATCCCAACTGTGTTGCTGCAGCCAGATCCAGAGCTCTGTTGCAGGCTGACGTTATAGTGCTGCTGGGTGCCAGACTTAATTGGATCCTACACTTTGGCTTTCCACCCAGATTCAGTGCCAATGTAAAGATCATTCAGGTGGATCTGTGTGCTGAAGAGTTGAGTAATAACGTGAGAGCTGCATCTGCTCTACTTGGAGACATAAAGATGGTGACCAGCCAGCTGTTGGAGACTGTAAGATCAGAGTCTTGGAGATTTCCATCTGATTCACAGTGGTGGGCGACACTAAGGGAGAAAATTACTGCCAATGCTCAGATAACAAAGGCTCTTTCTTTGCAGACGACTCTGCCTATGAACTACTACACTGCATTTCACCACATTTCGGAGCTCCTTCCTAAAGACTGCATCATAGTGAGTGAGGGAGCAAACACTATGGACATCGGCCGCACCATGTTGCTCAATCACCTCCCTCGGCACAGGTTAGATGCTGGTACTTTTGGCACTATGGGGGTAGGTCCAGGCTTTGCCATCGCAGCAGCAGTTCTGGAGCAAGCGCAGAGAGTCGGCCAAAAAGTGGTGTGTGTGGAAGGAGACAGTGCTTTCGGCTTCTCCGGCATGGAGGCAGAGACCATGTGCAGGTATAAACTGCCCATCATCATCATTGTAATTAATAACAATGGCATTTACAGTGGAGTGGATCCAGAGACATGGAAAGCAATGGAAAAGATGGGAGACATGACCACCATAGCTCCTCCGGTGACCCTATTGCCTGAGGCTCGGTACGAGCAGGTAATGAGCGCATTTGGTGGTCATGGGTATCTGGTTCGTACAGTGGAGGAACTGCGCACCGCACTACAAGACAGTCTGAAGAACACACAGATGCCCAGCCTTCTCAATGTACTTATTGACCCAACTTCAGACCGCAAACAACAGGAGTTTCCTTGGCTGACGCGTTCAAATCTTTAAAAGCTGAAAGGAAGAGGAAGAAATCACATCATGTCTCAACGGAGGACTTTATGCTACTTACACTACATTTGGTCGATTTACTGCAGGTGGCACCatttcctataaaaaaaaaaccgtCATTAAAAAACAGAATCATTTAAGGACCTGAAGTGAACTTCCATTCAACATCTTTATGTAAAAAGTTAACAAGAGTAATTCTCACCCTTCATGCCATTCCAAACCCGCATGACTTTGCATTCCCGGTGTCATAAAAGTAACTTGTTTTTGAAGAATTGCTTTCTTACAACATCAATTTATGcagttttataaaaattattaatgaaaCCTGGAGTCAAGTTCAGTCACCCAGAAGTCAGTGGGCTTTTTGAAAGGGTTAAATAGTTAAATGCCTGATAAAGctcaaaatatttacatatttttaagatattttttcaCTCTTGACTATTTGACcatttttaattagttaatatatttgAATCGATGTTTTTAAACCCTTGTACACACTATTCCACTTTTACagtcttgttgttgttgtatttctGCAAACTATTTCCactttcaaactttttaaaaaaagattctaAATAGAATTGAATGAGTTGATGGAAGCCTAATGGTTGttactgctgttttgtttagccTCTAAAATGATGACAATCAAAACTGTAAATGTAACAAATAAAGTAACCTGTAACAAAACATGTAAA
>TCONS_00019651
CGGTGAGCACTGGATGTTTGTGTTAGTGAGTGAAATGAATCAGTTGTAAAAGTAGTTATGGATGAAGTTACTGGAGCTCAACTCATCGCTGCGGCGCTGAAAGATCAGAATGTGGAGTACATGTTTGGCATTGTTGGTGTGCCTATCATTGAGGTGGCCATGGCTGCGCAAGCGGCTGGCATCAAGTATGTTGGCATGCGCAATGAACAAGCATGTTTGGATCTTTTTTCTTCTACCAGGCCTGCTACGCTGCATCTGCCATTGGATATTTGACTGGACGgcCAGCTGTCTGTCTAGTGGTGTCTGGGCCTGGCCTGATTCATGCGCTAGGAGGAATGGCTAATGCTAACGTGAACTGCTGgcCTGTCATTGTGCTAGGTGGCTCATCCGATAGAAACCAAGAAACCACAGGAGCGTTTCAGGAGTTCCCTCAGGTTGAAGCTTGTCGTTTGTATAGCAAGTTTTCTGCTCGA

Function

symbol description
hacl1 Predicted to enable thiamine pyrophosphate binding activity. Predicted to be involved in fatty acid alpha-oxidation. Predicted to act upstream of or within fatty acid metabolic process. Predicted to be active in peroxisome. Orthologous to human HACL1 (2-hydroxyacyl-CoA lyase 1).

GO:

id name namespace
GO:0001561 fatty acid alpha-oxidation biological_process
GO:0005777 peroxisome cellular_component
GO:0030976 thiamine pyrophosphate binding molecular_function
GO:0016829 lyase activity molecular_function
GO:0003824 catalytic activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
ko04146 Peroxisome

ZFIN:

id description
ZDB-GENE-040426-2058 Predicted to enable thiamine pyrophosphate binding activity. Predicted to be involved in fatty acid alpha-oxidation. Predicted to act upstream of or within fatty acid metabolic process. Predicted to be active in peroxisome. Orthologous to human HACL1 (2-hydroxyacyl-CoA lyase 1).

Ensembl:

ensembl_id ENSDARG00000020529

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019650 False 2494 mRNA 0.45 17 20167811 20194385
TCONS_00019651 True 473 nonsense_mediated_decay 0.49 6 20167834 20170828

Neighbor

gene id symbol gene type direction distance location
XLOC_009842 c16h2orf66 coding upstream 3357 20161805 ~ 20164454 (+)
XLOC_009841 ankrd28b coding upstream 12952 20055878 ~ 20154859 (+)
XLOC_009840 CU855688.1 coding upstream 358694 19805021 ~ 19809117 (+)
XLOC_009839 twist1b coding upstream 433662 19732543 ~ 19734149 (+)
XLOC_009837 BX005389.4 coding upstream 452601 19686713 ~ 19715210 (+)
XLOC_009844 colq coding downstream 3679 20198064 ~ 20238985 (+)
XLOC_009845 fkbp14 coding downstream 100591 20294976 ~ 20305104 (+)
XLOC_009846 cpvl coding downstream 302306 20496691 ~ 20515806 (+)
XLOC_009847 NA coding downstream 335740 20530125 ~ 20531772 (+)
XLOC_009848 NA coding downstream 490555 20684940 ~ 20695517 (+)
XLOC_009838 BX005389.1 non-coding upstream 463273 19704424 ~ 19704538 (+)
XLOC_009833 NA non-coding upstream 653820 19508738 ~ 19513991 (+)
XLOC_009832 NA non-coding upstream 786519 19380866 ~ 19381292 (+)
XLOC_009854 mir196d non-coding downstream 719028 20913413 ~ 20913484 (+)
XLOC_009859 NA non-coding downstream 946663 21141048 ~ 21142516 (+)
XLOC_009862 NA non-coding downstream 1440002 21634387 ~ 21634836 (+)

Expression


Co-expression Network