CI01000054_00888859_00895223 (LRRC14B)


Basic Information

Item Value
gene id CI01000054_00888859_00895223
gene name LRRC14B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 888448 ~ 895223 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_00888859_00895223.mRNA
ATGAAGAGCTTGAAGTTCCTAGCAGCCGAGGGCTTCGTCCAAACCGGAACAAATGCGTGTAAGAACCTCCACTGCTTGTCTTGCAATCTCTACCCAATCCTCTTCAAGGCCAGCTATCTGTGTGAGGAGGCCACGATGCTCCACGACTTGGTCCAGACGTGGCCTCTGACGGAGATCAACTTGCGCAAACTGTTAGGCCGGACCCCGGACTGTCCAGATGATCTCACGTCCCGCACCTGCAGGCTCTGTCTGGAGGCCTTTCTCACAGGTTTGAAGGACTATGTGTTTCAAGCTCCAAGCATGTATACAAAAAAGCTACGTGTGGTGGATATAGTCGGTCTGCAAGACACTGAACACCAGGTCTGTCCCTGCAGACGGACCCTCGGCCGTTGGGCACGAACCGAGCTGCTAACCCGCATGTGCTACGAGACTATGGAGTACATGCAGACCGGTCAAGCGGCGCCATCAGCGTTTCACGTGGAGATAGATGTCCGCGTGGATGCTTTTGTTACCGGACGGAACAACGAGGTGGTGGCTCAGGCTCTGTTGCTACGCAGACATTGCCCGTTAAAACTGTTCTTCGTTGGCCTGCGTGTGGATTCGTTGAGCCTCAGGAACCTCTTCTTCCTCCTGAAGCTGGTGGAGTCACATGGCCTGCAGAAGCTGGAAGTGGTGCACAACGTACATCTGGAGGCTCCACACATTGAGGTAATGCTCTCCCAGCTGAAGTTCCCCCAGCTGCGCTCGATCACGTTTCCTGCACAGGCTTTGAATGTACACAGGTTGGGCCCGGATGACGAAGGCCTCATAGGAGTTCTGGGTGAGCTGATGAGCAAACTGACGGAGCTGAGAGAGCTCTCTCTGGGGTTCTCCACTCTTACAGGACATCTGAGGAGACTGCTGAGACAGCTGTCCTGTTGCAAACTCTATTTAGGCCAGGACATGACTCTGGCAAAACATCCACTAAACACTCCTCTGCAGTGTATTGAGTTAGCGAACTGTAGTCTCAACGCAGTGGACATGGCCTACTTCGCCAACAGCCTACACAGTGAGCACATAGTAAAGCTGGACCTGAGCGGTCATGCGGTGGCGGACGTCTTCCCCAACACCTTCCGGAAGCTTCTGCATCGCTGTTCTGCCACACTCACTAGCCTGGGTCTGGAGGAGTGTGGACTGGACGATGAGACCCTGGATACGCTCACCCAAGCACTGAGACCCTGTCACGCGCTACAGGAATTAAAGATCCTGGGTAATCCACTGAGCACAGCTGCCCTGCGCCATCTCTTCAACACACTGGCTCTGGGTTTTCCTGCTTTGAGATATGTTGAGCTGCCCGTCCCTCGCGACTGTTATCCTGAAGGTGCATCCTACCCGCTGAATGATACGACACTGATAAATTACGACAGGGAGAAGTTCCAGCAAGCCAGGACTGAACTTGTTGGCATTCTAGAGAGGGAGGGAAAAAAAGACATAGAAGTCTGCACGCCATTATTTGGAGCCTATGATCCTGACATCAACGAGACGAGCAATGAGCTGGGAGTCTCCATGTTGCAGTCGTTCAGCAGTGTCGTAGGCAACTTCATTGACACAGTCAATAGTGTCACCCAACGGAGAGAGCAGAGTTAGACGGTGGAGTGAGACGTTCACAATGAACGAGAACTTATGTTTTCAACATTTATAATAAATGTTTCTTGAGCAATATATCAGCATATTAGACTGACTTCTGAAGGATCATGTGACACTGAGGACTGGAGTAATGATGCTGAAAATTCAGCTTTGATCACAGGAATAAATTACATTTTAAAATATAACTAATTTTAAATTGTAATATTTCTAAATATTGCTGTTTTTTTATGATCAAATAAATGCAGCATTGAGCACGAGACCGTCAAAAACATTTTATGCTGTTTGAAGTGTTAAAAATAATGTTGAGTGTTTTTGTGTGTACGCTATATATATATATATATATAAAAAACAGTTCAGTGCCTGCAAATAATACATAGACATGTAATAATGTATATTGAGATGAGCAATAAA

Function

symbol description
lrrc14b Predicted to act upstream of or within several processes, including negative regulation of apoptotic process; negative regulation of transcription, DNA-templated; and positive regulation of cell population proliferation. Predicted to be active in cytoplasm. Orthologous to human LRRC14B (leucine rich repeat containing 14B).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_00888859_00895223.mRNA True 2037 mRNA 0.48 4 888448 895223

Neighbor

gene id symbol gene type direction distance location
CI01000054_00195914_00197098 NA coding downstream 691229 195226 ~ 197219 (-)
CI01000054_00188121_00191695 NA coding downstream 696490 187797 ~ 191958 (-)
CI01000054_00147623_00148143 NA coding downstream 740193 147591 ~ 148255 (-)
CI01000054_00094396_00130159 NA coding downstream 758263 94260 ~ 130185 (-)
CI01000054_00898039_00902381 NA coding upstream 2319 897542 ~ 902381 (-)
CI01000054_00924015_00926256 GATAD1 coding upstream 28511 923734 ~ 926256 (-)
CI01000054_00929337_00955240 ANKIB1A coding upstream 33909 929132 ~ 955674 (-)
CI01000054_00965111_00970121 LYPLA2, LYPA2 coding upstream 69419 964642 ~ 970121 (-)
CI01000054_00974025_00979306 PITHD1 coding upstream 78677 973900 ~ 979306 (-)
G230145 NA non-coding downstream 289 885254 ~ 888159 (-)
G230148 NA non-coding downstream 2223 863958 ~ 886225 (-)
G230311 NA non-coding downstream 27202 860921 ~ 861246 (-)
G230308 NA non-coding downstream 30887 857336 ~ 857561 (-)
G230305 NA non-coding downstream 34675 853442 ~ 853773 (-)
G230328 NA non-coding upstream 19912 915135 ~ 915357 (-)
G230238 NA non-coding upstream 98169 993392 ~ 996451 (-)
G230335 NA non-coding upstream 110043 1005266 ~ 1005502 (-)
G230336 NA non-coding upstream 120500 1015723 ~ 1019141 (-)
G230341 NA non-coding upstream 125451 1020674 ~ 1020880 (-)
G230178 NA other upstream 290310 1185533 ~ 1230135 (-)
G230923 NA other upstream 1942014 2837237 ~ 2837682 (-)
CI01000054_02857402_02860451 NA other upstream 1958918 2857402 ~ 2860573 (-)
G230908 NA other upstream 2162425 3057648 ~ 3063343 (-)
G231645 NA other upstream 3086624 3981847 ~ 3982823 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014313 lrrc14b coding NC_007130.7 CM002903.2 44039849 ~ 44047176 (+)