CI01000054_00898039_00902381


Basic Information

Item Value
gene id CI01000054_00898039_00902381
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 897542 ~ 902381 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_00898039_00902381.mRNA
GATCTGTGTGGTAGAGATCCAAAAGTAGATCATTACTGTGCGCTGCAAGTAACACTGCCACCAGAGAGAGTAATGGAGAATCCCAAATCTTTGCTTTCTTCTCCTGAAAATGGAAGGCAGCGTCCACTCAAAGATGCACTGAGGAGAAATGGGAAGAGTGATGATAAGGAGTGTAACGTGTCTGTCATGGATGAAAATCGTCGAGAGTGGATGATTACGTTGTACAATTTGGACAACAACGGGAAAATAAACAGAGAGAATATGTTGAGCTTGATGCAGACGATCTATGAGGCGGTCGAGGCATCAGTCAAACAGCTGGTGCTCAGCAATGGCACAAGCCTGCGTGTGAAGCTGAGCGTCACTCCATTATCCAGCAGAAAAGATCGGGATGCTGGGATGCAGTCTGTGAATGAGCGGGATCAGATGGAGGACTCAGTGCGAGGACTGAACTCGGATCAAATGGGTGTTCTGGAGAAGAAGCACTACTCCCTAGATGAAAACACAGAACGTAGGAACCACTATCTGGATCTGGCTGGAATTGAGAACTATGCTTCTCGATTTGAAGAAACATCTGGTGAGGAGCAGCCTCAGGACAGCCCTGCGCCGCGTGGCCATCACCGTCGCTCTCAACCCGAGACCTGCAGCCCTGTGGAGTCCTCTGGGAGATCCATTCCTTTCCTCAGGTCGCTCCGCAGCCGCAGCAAGTCTGTCGGCTATAGTGGAGCCACAACCAAACCCAGCAAGCTCCATGGGCATCACCCTATGACCTGGTGCCACCCATCCCAACAGCAACCTCTGCTGCACAGCTCCAGCAAACGCATCCGTGCCAGAGCCCATGCAGGTGGTTCATTGGCCAAACAGACAAAACTTGAACATTTCTACAATAATAGGGACTGAACCACTGTTTTCGATGATATGAGAACCGCACCTGCTCATAAAAATTCAGTAGAAAAGAATCTGCATTCATTATGCTGGTGTGCAGCTCCCTCTTGTGGTTATGAACGGAATTTGTAGCTCCTATTTTGATTATAATGCATTTGGCATACTTTCCTTTGTGATTTGGAAAATGTGACATGTTAGTATATCCTTAATGATTGTAATATTTGTGAGGTGCAACACAAATTTTTCCTCAGGAATGTGTTTTATAGACTATATGACCACTTTTATTGTATGTTATTACATATATTATTGTTCTCATTTATGTAGTTTTGATTCAACCTGCTTATTATAATACATTGGTTGCAATCAGTGTTTTTTAAAACCAAAGTCTTTACAGCTATATTGCATGTTTATGTTCTGAATAGGGTTACTAATATTATATTAGAAAATGGCATGTTTTATTGTTGACATCATGGTTAAAACTATAAAACACATAATGTACCAAACAAAATAAA

Function

NR:

description
naked cuticle-like protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_00898039_00902381.mRNA True 1394 mRNA 0.43 8 897542 902381

Neighbor

gene id symbol gene type direction distance location
CI01000054_00888859_00895223 LRRC14B coding downstream 2319 888448 ~ 895223 (-)
CI01000054_00195914_00197098 NA coding downstream 700323 195226 ~ 197219 (-)
CI01000054_00188121_00191695 NA coding downstream 705584 187797 ~ 191958 (-)
CI01000054_00147623_00148143 NA coding downstream 749287 147591 ~ 148255 (-)
CI01000054_00094396_00130159 NA coding downstream 767357 94260 ~ 130185 (-)
CI01000054_00924015_00926256 GATAD1 coding upstream 21353 923734 ~ 926256 (-)
CI01000054_00929337_00955240 ANKIB1A coding upstream 26751 929132 ~ 955674 (-)
CI01000054_00965111_00970121 LYPLA2, LYPA2 coding upstream 62261 964642 ~ 970121 (-)
CI01000054_00974025_00979306 PITHD1 coding upstream 71519 973900 ~ 979306 (-)
CI01000054_00979998_00989171 TCEB3 coding upstream 77617 979998 ~ 989171 (-)
G230145 NA non-coding downstream 9383 885254 ~ 888159 (-)
G230148 NA non-coding downstream 11317 863958 ~ 886225 (-)
G230311 NA non-coding downstream 36296 860921 ~ 861246 (-)
G230308 NA non-coding downstream 39981 857336 ~ 857561 (-)
G230305 NA non-coding downstream 43769 853442 ~ 853773 (-)
G230328 NA non-coding upstream 12754 915135 ~ 915357 (-)
G230238 NA non-coding upstream 91011 993392 ~ 996451 (-)
G230335 NA non-coding upstream 102885 1005266 ~ 1005502 (-)
G230336 NA non-coding upstream 113342 1015723 ~ 1019141 (-)
G230341 NA non-coding upstream 118293 1020674 ~ 1020880 (-)
G230178 NA other upstream 283152 1185533 ~ 1230135 (-)
G230923 NA other upstream 1934856 2837237 ~ 2837682 (-)
CI01000054_02857402_02860451 NA other upstream 1951760 2857402 ~ 2860573 (-)
G230908 NA other upstream 2155267 3057648 ~ 3063343 (-)
G231645 NA other upstream 3079466 3981847 ~ 3982823 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014312 nkd3 coding NC_007130.7 CM002903.2 44009473 ~ 44036792 (+)