CI01000054_03964701_03964965


Basic Information

Item Value
gene id CI01000054_03964701_03964965
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 3964690 ~ 3964965 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_03964701_03964965.mRNA
TGACCATGGCAAATTCTGCTCTTCGGGCAGCAGTCAGAGTGAAACATTCATTTGGTCTCGGTCCAAACTGCAGCCTGAGTGTCCCAAAATTTCATTCTCTCTGCCAGCGGTGACCCTGCACTCAGTAATGAGGGAAAAAGCAGTGCACAATACAATCAATGGTGCCATTAAACTCTTGAGGTCAAACCGCAATGCTCTGAAACGTTGCACGGCAGCATGGATCCATCTAGAATGTGTCATTCCAAAAAACTGTGCCGACTACTAAGCGTTAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_03964701_03964965.mRNA True 276 mRNA 0.46 1 3964690 3964965

Neighbor

gene id symbol gene type direction distance location
CI01000054_03918853_03925416 NA coding downstream 39274 3918398 ~ 3925416 (-)
CI01000054_03485424_03500327 NA coding downstream 464201 3484828 ~ 3500489 (-)
CI01000054_03082593_03087260 SFPQ coding downstream 877145 3082348 ~ 3087545 (-)
CI01000054_03049995_03054032 NA coding downstream 910658 3049864 ~ 3054032 (-)
CI01000054_03032517_03047094 ZMYM4 coding downstream 917596 3031826 ~ 3047094 (-)
CI01000054_03998494_04025965 NA coding upstream 33453 3998418 ~ 4026082 (-)
CI01000054_04067809_04076131 NA coding upstream 102834 4067799 ~ 4076762 (-)
CI01000054_04210959_04214380 NXPH1, NXPH4 coding upstream 244875 4209840 ~ 4214380 (-)
CI01000054_04264074_04331270 THSD7AA, THSD7A coding upstream 298897 4263862 ~ 4331270 (-)
CI01000054_04411682_04448848 NA coding upstream 446464 4411429 ~ 4448848 (-)
G231613 NA non-coding downstream 51127 3908451 ~ 3913563 (-)
G231615 NA non-coding downstream 72749 3890968 ~ 3891941 (-)
G231600 NA non-coding downstream 157522 3806962 ~ 3807168 (-)
G231597 NA non-coding downstream 173303 3791164 ~ 3791387 (-)
G231596 NA non-coding downstream 174789 3789671 ~ 3789901 (-)
G231658 NA non-coding upstream 2762 3967727 ~ 3968020 (-)
G231684 NA non-coding upstream 59526 4024491 ~ 4089465 (-)
G231694 NA non-coding upstream 127962 4092927 ~ 4093128 (-)
G231699 NA non-coding upstream 131301 4096266 ~ 4096985 (-)
G231747 NA non-coding upstream 183395 4148360 ~ 4148564 (-)
G230908 NA other downstream 901347 3057648 ~ 3063343 (-)
CI01000054_02857402_02860451 NA other downstream 1104117 2857402 ~ 2860573 (-)
G230923 NA other downstream 1127008 2837237 ~ 2837682 (-)
G230178 NA other downstream 2734555 1185533 ~ 1230135 (-)
G231645 NA other upstream 16882 3981847 ~ 3982823 (-)
CI01000054_04671351_04681181 PEF1 other upstream 705186 4670151 ~ 4681361 (-)
G232274 NA other upstream 1241234 5206199 ~ 5209240 (-)
CI01000054_06629482_06641861 TRIQK other upstream 2663117 6628082 ~ 6642160 (-)
CI01000054_07165957_07169539 HEYL other upstream 3200470 7165435 ~ 7169539 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G168543 NA non-coding CI01000033 null 1408728 ~ 1408948 (+)
tiger barb (Puntius tetrazona) G129635 NA non-coding NC_056717.1 CM032086.1 719320 ~ 722311 (-)
mexican tetra (Astyanax mexicanus) G141413 NA non-coding NC_035912.1 CM008315.1 14185207 ~ 14191053 (+)