XLOC_009894 (apoa4b.1)


Basic Information

Item Value
gene id XLOC_009894
gene name apoa4b.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 23913943 ~ 23916263 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019738
AGTTCAAAGGACAGCATCGCATCATGTGACCGCAGGCTGAAAGTGATGGTGGGGGAGCGCCACTGACAACATGGCATTGGAAGCTGGACTTTGATTTTTTTCTATGGATATATATAGCCGACTGTCCTCACTAAAGCTTACTGGACTAAGCAATACCAGTGGGACTTGAAGGTAATTTGAGCTTGACAGACTATGACTGAAATGTATTATGCATATAAACATGCACcgtttaagacattttaatgcaaataattaaaatcattttCTCTTTTTAGCAAACAACAGTGAAGATGAAACTGTATCTGATACTTGCCTTTGTGGCATTCACAGGCTGCCAGGCCAACCTATTCTATGCTGATGAGCCCAAACCACAGCTGGAGCAGCTGACAGATGCATTCTGGAGCTATGTTTCCAAAGCAACACAAACTGCAGAGGAAACCGTCAAGATGATCAGAGAGTCTCAACTGGGTCAAGAAGTCAATGAAAGACTGACCCAGAGTGCTGATATGGCCAGTGAATACGCCGTCACCCTCAAGAAACAGGTGGATCCTCTGACTGAAGAGCTGATGAACAAAATCACCAAGGAGACTGAAGTGCTGAGGGAGCGTCTGGGGCAGGACCTGATCAATGTGAGAGAGAAACTCGAGCCCTATGCTGACAACATGAAGAGCCAGATCCAGCAGAGAGTGGAGGAGCTCAGGGCGGCCATGGCTCCGTATGCTGACTCCCTGGATTCTGAAACCCTGAAGGCCACTCTTCTCCAGAAGAGTGAGGAGCTGAGAGGAAACCTGGAGCAGAGTGTGAAGGAGCTGCAGGCTCAGCTGGAGCCCTACACTGCTGAACTCAAGGAGAAAGTGGACCAGCATCTGCAGGAGTTCCAGAAAACTGTGAGTCCTCTAGCTGAGGATCTGCAGGTCCAGATTAGAGAGAGAGCCCAGATTGTCCAGCAGAGTCTTACACCCTATGCTGAAGACCTTAAGGAGAAGCTGGACCCCTATGCACAAAACCTAAAAGACCAGCTGATCTCTCTGTACGATTCTTTCACCAAGAGATATTAAATGCTCAACAGACTTCTTCCTACTGTATGTCACTAACAGAACTGTTTTtccttttatgagtttttttttttactctaaaatCTAACTCTCCAATTACTGTGACCCAAATCACACTTCTAAACAACAACAAGATCTTTTTGGGTCAAACACTAATATACATAAAGGAATTGGGGATTGGTTTTGTTCTAAAATACAGTTGTTTACACATTAGCCATCCCACCAGATGCAGAAATTTCACTCACTTTCTAACTGTTGTGTATTTATTAAGCAACTCTTTATTACTTCTGAcagaaaatgcttttcttgcaaATGTATAAATGCCAAGTGTATCATTTGTCGTATTTATGCAACAATAAAACACCTGCAATTTATTAACACAGTGCTTCTGAGCATTATGTCCACTCAACCCACAcatgtaatgcattacaagtgaCTTTGaatcataatacatttttaaatattacatttctagCTCTAAAAAAGCACAAAGACAacattacttctttttttttatcaatgaaATACGCCATGACAAGATTACACATTCCTAATGaaagcaccaaacaaacaaagttatttctaaaaataaatgaataaatggtttaACAATCCTCGGCTTCTTAAAAGtttatcattatttaataaaaaaaatgtatat
>TCONS_00019739
TCACTAAAGCTTACTGGACTAAGCAATACCAGTGGGACTTGAAGCAAACAACAGTGAAGATGAAACTGTATCTGATACTTGCCTTTGTGGCATTCACAGGCTGCCAGGCCAACCTATTCTATGCTGATGAGCCCAAACCACAGCTGGAGCAGCTGACAGATGCATTCTGGAGCTATGTTTCCAAAGCAACACAAACTGCAGAGGAAACCGTCAAGATGATCAGAGAGTCTCAACTGGGTCAAGAAGTCAATGAAAGACTGACCCAGAGTGCTGATATGGCCAGTGAATACGCCGTCACCCTCAAGAAACAGGTGGATCCTCTGACTGAAGAGCTGATGAACAAAATCACCAAGGAGACTGAAGTGCTGAGGGAGCGTCTGGGGCAGGACCTGATCAATGTGAGAGAGAAACTCGAGCCCTATGCTGACAACATGAAGAGCCAGATCCAGCAGAGAGTGGAGGAGCTCAGGGCGGCCATGGCTCCGTATGCTGACTCCCTGGATTCTGAAACCCTGAAGGCCACTCTTCTCCAGAAGAGTGAGGAGCTGAGAGGAAACCTGGAGCAGAGTGTGAAGGAGCTGCAGGCTCAGCTGGAGCCCTACACTGCTGAACTCAAGGAGAAAGTGGACCAGCATCTGCAGGAGTTCCAGAAAACTGTGAGTCCTCTAGCTGAGGATCTGCAGGTCCAGATTAGAGAGAGAGCCCAGATTGTCCAGCAGAGTCTTACACCCTATGCTGAAGACCTTAAGGAGAAGCTGGACCCCTATGCACAAAACCTAAAAGACCAGCTGATCTCTCTGTACGATTCTTTCACCAAGAGATATTAAATGCTCAACAGACTTCTTCCTACTGTATGTCACTAACAGAACTGTTTTtccttttatgagtttttttttttactctaaaatCTAACTCTCCAATTACTGTGACCCAAATCACACTTCTAAACAACAACAAGATCTTTTTGGGTCAAACACTAATATACATAAAGGAATTGGGGATTGGTTTTGTTCTAAAATACAGTTGTTTACACATTAGCCATCCCACCAGATGCAGAAATTTCACTCACTTTCTAACTGTTGTGTATTTATTAAGCAACTCTTTATTACTTCTGAcagaaaatgcttttcttgcaaATGTATAAATGCCAAGTGTATCATTTGTCGTATTTATGCAACAATAAAACACCTGCAATTTATTAA
>TCONS_00019740
ACTGGACTAAGCAATACCAGTGGGACTTGAAGCAAACAACAGTGAAGATGAAACTGTATCTGATACTTGCCTTTGTGGCATTCACAGGCTGCCAGGCCAACCTATTCTATGCTGATGAGCCCAAACCACAGCTGGAGCAGCTGACAGATGCATTCTGGAGCTATGTTTCCAAAGCAACACAAACTGCAGAGGAAACCGTCAAGATGATCAGAGAGTCTCAACTGGGTCAAGAAGTCAAGTGAGTCAAAATCTTCCTGCTGGACATCATTATTTAGAGTATTTCTGTATGAAACTCAAATGTTCTTCTTTACCTCACAGTGAAAGACTGACCCAGAGTGCTGATATGGCCAGTGAATACGCCGTCACCCTCAAGAAACAGGTGGATCCTCTGACTGAAGAGCTGATGAACAAAATCAC

Function

symbol description
apoa4b.1 Predicted to enable lipid binding activity. Predicted to act upstream of or within lipid transport and lipoprotein metabolic process. Predicted to be located in extracellular region. Is expressed in female organism; gut; liver; and yolk syncytial layer. Human ortholog(s) of this gene implicated in Alzheimer's disease; colitis; myocardial infarction; and ulcerative colitis. Orthologous to human APOA4 (apolipoprotein A4).

GO:

id name namespace
GO:0042157 lipoprotein metabolic process biological_process
GO:0006869 lipid transport biological_process
GO:0005576 extracellular region cellular_component
GO:0008289 lipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1263 Predicted to enable lipid binding activity. Predicted to act upstream of or within lipid transport and lipoprotein metabolic process. Predicted to be located in extracellular region. Is expressed in female organism; gut; liver; and yolk syncytial layer. Human ortholog(s) of this gene implicated in Alzheimer's disease; colitis; myocardial infarction; and ulcerative colitis. Orthologous to human APOA4 (apolipoprotein A4).

Ensembl:

ensembl_id ENSDARG00000040298

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019738 False 1716 mRNA 0.41 3 23913943 23916263
TCONS_00019739 False 1202 mRNA 0.44 4 23914070 23915980
TCONS_00019740 True 417 lncRNA 0.45 3 23914082 23915127

Neighbor

gene id symbol gene type direction distance location
XLOC_009893 gtpbp10 coding upstream 11504 23891443 ~ 23902439 (+)
XLOC_009891 si:dkey-7f3.9 coding upstream 78021 23811554 ~ 23835922 (+)
XLOC_009890 rab13 coding upstream 104332 23796612 ~ 23809611 (+)
XLOC_009888 kcnn3 coding upstream 194294 23598908 ~ 23719649 (+)
XLOC_009889 CR533578.1 coding upstream 306591 23607231 ~ 23607352 (+)
XLOC_009895 apoa4b.2 coding downstream 5347 23921610 ~ 23922868 (+)
XLOC_009896 si:dkey-7f3.14 coding downstream 7483 23923746 ~ 23924845 (+)
XLOC_009897 apoa4b.2 coding downstream 30933 23947196 ~ 23948538 (+)
XLOC_009898 apoeb coding downstream 44481 23960744 ~ 23963461 (+)
XLOC_009899 apoc1 coding downstream 55863 23972126 ~ 23973721 (+)
XLOC_009875 NA non-coding upstream 1217447 22695226 ~ 22696496 (+)
XLOC_009872 NA non-coding upstream 1334617 22575143 ~ 22579326 (+)
XLOC_009870 NA non-coding upstream 1584915 22327970 ~ 22329028 (+)
XLOC_009869 NA non-coding upstream 1586441 22323766 ~ 22327502 (+)
XLOC_009902 NA non-coding downstream 102845 24019108 ~ 24028618 (+)
XLOC_009903 NA non-coding downstream 282216 24198479 ~ 24207903 (+)
XLOC_009904 CT867948.1 non-coding downstream 599829 24516092 ~ 24524076 (+)
XLOC_009905 NA non-coding downstream 649471 24565734 ~ 24573801 (+)
XLOC_009910 NA non-coding downstream 918512 24834775 ~ 24897111 (+)

Expression


Co-expression Network