Gene
RNA
| Item | Value |
|---|---|
| gene id | G230999 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000054 |
| NCBI id | null |
| chromosome length | 13006764 |
| location | 2695624 ~ 2695960 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU262174 | True | 337 | lncRNA | 0.40 | 1 | 2695624 | 2695960 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000054_02611877_02612240 | GNGT1 | coding | downstream | 83230 | 2611672 ~ 2612394 (-) |
| CI01000054_02593560_02610677 | NA | coding | downstream | 84947 | 2593560 ~ 2610677 (-) |
| CI01000054_02529145_02537881 | COL1A2 | coding | downstream | 157743 | 2528905 ~ 2537881 (-) |
| CI01000054_02514735_02525669 | CASD1 | coding | downstream | 169955 | 2514659 ~ 2525669 (-) |
| CI01000054_02491166_02492438 | NA | coding | downstream | 203186 | 2491065 ~ 2492438 (-) |
| CI01000054_02709494_02814598 | VPS50 | coding | upstream | 13529 | 2709489 ~ 2814900 (-) |
| CI01000054_02825786_02828251 | NA | coding | upstream | 129793 | 2825753 ~ 2828251 (-) |
| CI01000054_02840361_02849268 | NA | coding | upstream | 143872 | 2839832 ~ 2849268 (-) |
| CI01000054_02857402_02860451 | NA | coding | upstream | 161442 | 2857402 ~ 2860573 (-) |
| CI01000054_02868603_02911589 | CDK6 | coding | upstream | 172484 | 2868444 ~ 2911805 (-) |
| G230997 | NA | non-coding | downstream | 1186 | 2694209 ~ 2694438 (-) |
| G230978 | NA | non-coding | downstream | 80151 | 2613035 ~ 2615473 (-) |
| G230977 | NA | non-coding | downstream | 111804 | 2583331 ~ 2583820 (-) |
| G230965 | NA | non-coding | downstream | 141681 | 2553484 ~ 2553943 (-) |
| G230964 | NA | non-coding | downstream | 143981 | 2551427 ~ 2551643 (-) |
| G230913 | NA | non-coding | upstream | 167440 | 2863400 ~ 2866640 (-) |
| G231001 | NA | non-coding | upstream | 221275 | 2917235 ~ 2917797 (-) |
| G230922 | NA | non-coding | upstream | 222067 | 2918027 ~ 2979454 (-) |
| G230910 | NA | non-coding | upstream | 254821 | 2950781 ~ 3043844 (-) |
| G231003 | NA | non-coding | upstream | 360768 | 3056728 ~ 3056940 (-) |
| G230178 | NA | other | downstream | 1465489 | 1185533 ~ 1230135 (-) |
| G230923 | NA | other | upstream | 141277 | 2837237 ~ 2837682 (-) |
| G230908 | NA | other | upstream | 361688 | 3057648 ~ 3063343 (-) |
| G231645 | NA | other | upstream | 1285887 | 3981847 ~ 3982823 (-) |
| CI01000054_04671351_04681181 | PEF1 | other | upstream | 1974191 | 4670151 ~ 4681361 (-) |
