G236222


Basic Information

Item Value
gene id G236222
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11277411 ~ 11279005 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU267892
GGACCATCGTGTGTGCAGTTGCTTCTTTGTCGTCTCTTTTAAGCATAATGGCATTTCCTTGAAGTCTTCATAGAACATTCCTTTTGCCACCTTAAATGATATGTATGAATGCCACCTAAGAGATGCATTTTTGTCACAACTGCTGCAAGAATGAAGTAGAAGTTCCTACTTTGTTGAGGTGTCAATCACCAAATGTTAATTTTGAGTAAGGCCAGATCTAATGACAGTAGTGAATATTACATACTGGATTGCCATTTAACATTTTTATTTGTTGTTGCTGAATGTGTTATTGGTTGAAATATTGAGGAATGTCTTGATTAGATTAAAACTGTTTTTGAATTAAAATAATCAACTAAAGGTTTTTTTTTTTTTTTTTTTTTTTTAAATAAATGAAAGCAACCATTGTTGGTTCTGTGTATTTGTGTTTGGTAGCATGAGAAGAATAGTCAGAGATATAGTGGCATGAACAACTGGTTGATTGTATATTATCCTGCTTATTACGTGGCTATTTGCCATACAAGTACATAATTGGAAATATTGGTTGGTGTAATTGGTTGTTTTTTACCTCTTGTAATAAACTCAAAGTTTCTGCAAATTAAAGCCGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU267892 True 605 lncRNA 0.32 3 11277411 11279005

Neighbor

gene id symbol gene type direction distance location
CI01000054_11171795_11178974 NA coding upstream 98302 11171731 ~ 11179109 (+)
CI01000054_11162176_11165636 NA coding upstream 111584 11160059 ~ 11165827 (+)
CI01000054_11154206_11157480 NA coding upstream 119581 11154129 ~ 11157830 (+)
CI01000054_11142387_11149427 NA coding upstream 127288 11141982 ~ 11150462 (+)
CI01000054_11126599_11136327 PTP4A3.L, PTP4A3, MGC131305 coding upstream 140169 11124621 ~ 11137242 (+)
CI01000054_11280613_11285395 NA coding downstream 1608 11280613 ~ 11285395 (+)
CI01000054_11289604_11337266 NA coding downstream 10599 11289604 ~ 11337380 (+)
CI01000054_11409512_11412290 TXNIP, TXNIPA coding downstream 130249 11409254 ~ 11413131 (+)
CI01000054_11536181_11537063 NA coding downstream 255752 11534757 ~ 11537164 (+)
CI01000054_11564820_11568338 S100V2 coding downstream 285815 11564820 ~ 11568999 (+)
G236257 NA non-coding upstream 33128 11244063 ~ 11244283 (+)
G236249 NA non-coding upstream 44177 11226726 ~ 11233234 (+)
G236176 NA non-coding upstream 202046 11014131 ~ 11075365 (+)
G236195 NA non-coding upstream 327723 10926963 ~ 10949688 (+)
G236281 NA non-coding downstream 17144 11296149 ~ 11297001 (+)
G236305 NA non-coding downstream 90090 11369095 ~ 11373596 (+)
G236362 NA non-coding downstream 228420 11507425 ~ 11507904 (+)
G236373 NA non-coding downstream 270599 11549604 ~ 11550696 (+)
G236822 NA non-coding downstream 318261 11597266 ~ 11597518 (+)
G235560 NA other upstream 885033 10388136 ~ 10392378 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other upstream 2947823 8325126 ~ 8329716 (+)
G233306 NA other upstream 2972462 8304599 ~ 8304949 (+)
G233024 NA other upstream 3667518 7567523 ~ 7609893 (+)
G232870 NA other upstream 4388908 6887912 ~ 6888503 (+)
CI01000054_11633235_11635069 PRF1.8 other downstream 353971 11632959 ~ 11635103 (+)
CI01000054_11648262_11648786 NA other downstream 368974 11647959 ~ 11649495 (+)
G236874 NA other downstream 534683 11813688 ~ 11816475 (+)
CI01000054_12887165_12901376 NA other downstream 1605897 12886994 ~ 12902006 (+)

Expression


Co-expression Network