CI01000054_11536181_11537063


Basic Information

Item Value
gene id CI01000054_11536181_11537063
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11534757 ~ 11537164 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_11536181_11537063.mRNA
GTATTAAATGCGCTGGAGAAATCAAAGAACATGATTCTCACAGCGCTACTGCCCCTATCCAGGTACGAGAGTGACTGGTGGAGCAGGATGGTGCCATCCTCCCTCACCCTCTCCTGGTACGCAAACTGCAAAGGGTCGAGTGCATGATGGACCTGTGGTCTGAGGTGGTGTAGCAACAGCTGTTCCATGGTCTTCGTGACATGTGATAAATCAATATTTTCAAACAATATAACTTTATATGACATTATGTAAAACTGCAGGGTATGTGAAAAAGAATAAGCAACTCAAACAAAAGAGTAAACACAACTACAAGTCAAGTATTCTTAGACAACTTAATTATACATTTAAGTATCTCGATCAAAAGATTGAGTACAAGAATAGGTCAAAACTTCATATACTTACAATTACACAATTGTATACTTGAGTTATACTGACAGAAAAGTCTATTTCTGATAAGTACATAAAGTATATTTATAAGAAGTACATAAAAAGTGGAATGAAAGTATACTTTCTTATTTTTAGTTTAAAAGAAGTATACTAATAGCACACTTGAAAAAACTTTTTGTAAGGGCACCCAAACATTGTTTACTCTTTCTCTCATACCATTCTATGGCTTTCTTCTGTAGAACACAAAAGAAGATATTTCACATATTTCAACTGTTTTGTCCATATGAGATCAAAAACAGCATTGCATTGACCAAAAAAAAAAAAAAAAAAAAATCACTGAAGAAAGTCATGCAAGATTGGAGTGTTTTTAATTTTCATATTTGTGTTATCTATTTTAACATGCAGTTACATAATTCATACAGTATATTTACTAGCTTGACATTCCACATTTGTAGCTATCTGCAGTGTGGAGAAACAGTAGGCTATTGTCAGTTTGTGAGTGAAGGTGTGGGCGTTAAGCATTGGCATACACCATGCTGCTCTTTTCATCTCACAACATGTAGTTAGATAAAAAACAAGTGACAGCATTGAAAATAACAGCAGATTGTCAGAAAGAGTAGAGTTGACAAGAACAATTTCTCAGCATTGACTGCTACACATGAAACAAACTAATTCAATAACTGTAGATGATACGTTGAAATATGCTGCGTGTACCTGCTGAAACATAAGCAGTCTGTGCTACTTTGCAGCTTGTTTGCTTAAATCATTATTACCTGCATAGTAAAAGTTACCTTAACTTCTTAGAGCTTATGATAAGTTATAAAACTGTGTTGTGCAACATAAAGATATCTATTATTTCAGTGTATGCTTTGCAACAGTGATTTCTAAGTGCTGGGAAGTGCCACCCACTGGTAAGTTTTTTTTTTTTTTTTTTACTAAAAAGTAAATGAAACTCGTGTACTGGCATCATTTGGCACTAAGATTGTGACCTTTAAAGGTGACGTTAAAAGGTGCATCAGCGCCTTGAAAACATTAACATGAGTACCTGGATGTACTGTTGGATTTTATGTTTTTGCATTTCAGCTTTAAAAACTACTTACTCGTTTTTCGTGGCTCAGTCACCGATCCTCACACACGTCTCAGTCGGAGGCACTGTAAAATTAACATGTACATTTGAACAGAACGTTTTCTGCTTTGCTGCTGTTACATGGCAAAAGTTGAACCTACGGACTGGTAAACTGACAGAGGCGAGGTCTGGCTCTCAGCCTGATTTTCCTCAAAATTATGGTAAAACTTGTGTTCTTAATTTTACAAATGTAACACCAAACGATTCAGGTTTGTATTATTGCATTACCTTTTATATGTCAACGGCTATTGTCAGCAGTGGAAGCAGGGTGATCGTAACAGATCACTCTGTTGTGGAACCAAAACTATCCATCTTATACTCATCACATGAACCTGGCTCATCATTAGTAGCACTGCAGTGTCTTGTGACCGGAGTCATCCCGTCTCAAGTGCGGGTGTTCTGGATGATTAAGAAGAAAGTCCGTGTTGGATGGACCGAATCTGCCTGGACAGACGCCACTGATTCAGCCACAGAATTCACACGTGCTCATCTCTCTATTCCTGCAGTGGAGTGGACTGAAGATGATAAAATCCAATGCTTTGCTGAATATAATGGCAAGAACATCTCCAAAACTCTGAAGCGATATGGTGCGTGTAAATGATTAAAGTCTCAGAGAAACATCAGGGCAAATGTTACGCGATATATCTCCTCATTTTATTTACTTTGTATTTTCAGAATTTGGTGATTAGATTATATCGCAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_11536181_11537063.mRNA True 2215 mRNA 0.37 3 11534757 11537164

Neighbor

gene id symbol gene type direction distance location
CI01000054_11409512_11412290 TXNIP, TXNIPA coding upstream 121626 11409254 ~ 11413131 (+)
CI01000054_11289604_11337266 NA coding upstream 197377 11289604 ~ 11337380 (+)
CI01000054_11280613_11285395 NA coding upstream 249362 11280613 ~ 11285395 (+)
CI01000054_11171795_11178974 NA coding upstream 355648 11171731 ~ 11179109 (+)
CI01000054_11162176_11165636 NA coding upstream 368930 11160059 ~ 11165827 (+)
CI01000054_11564820_11568338 S100V2 coding downstream 27656 11564820 ~ 11568999 (+)
CI01000054_11600741_11608257 NA coding downstream 63342 11600506 ~ 11608390 (+)
CI01000054_11633235_11635069 PRF1.8 coding downstream 95795 11632959 ~ 11635103 (+)
CI01000054_11637464_11637950 NA coding downstream 100169 11637333 ~ 11638191 (+)
CI01000054_11648262_11648786 NA coding downstream 110795 11647959 ~ 11649495 (+)
G236362 NA non-coding upstream 26853 11507425 ~ 11507904 (+)
G236305 NA non-coding upstream 161161 11369095 ~ 11373596 (+)
G236281 NA non-coding upstream 237756 11296149 ~ 11297001 (+)
G236222 NA non-coding upstream 255752 11277411 ~ 11279005 (+)
G236257 NA non-coding upstream 290474 11244063 ~ 11244283 (+)
G236373 NA non-coding downstream 12440 11549604 ~ 11550696 (+)
G236822 NA non-coding downstream 60102 11597266 ~ 11597518 (+)
G236848 NA non-coding downstream 77473 11614637 ~ 11614917 (+)
G236849 NA non-coding downstream 79663 11616827 ~ 11617146 (+)
G235560 NA other upstream 1142379 10388136 ~ 10392378 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other upstream 3205169 8325126 ~ 8329716 (+)
G233306 NA other upstream 3229808 8304599 ~ 8304949 (+)
G233024 NA other upstream 3924864 7567523 ~ 7609893 (+)
G232870 NA other upstream 4646254 6887912 ~ 6888503 (+)
G236874 NA other downstream 276524 11813688 ~ 11816475 (+)
CI01000054_12887165_12901376 NA other downstream 1347738 12886994 ~ 12902006 (+)

Expression


Co-expression Network