RNA id: CI01000054_11536181_11537063.mRNA



Basic Information


Item Value
RNA id CI01000054_11536181_11537063.mRNA
length 2215
RNA type mRNA
GC content 0.37
exon number 3
gene id CI01000054_11536181_11537063
representative True

Chromosome Information


Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11534757 ~ 11537164 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTATTAAATGCGCTGGAGAAATCAAAGAACATGATTCTCACAGCGCTACTGCCCCTATCCAGGTACGAGAGTGACTGGTGGAGCAGGATGGTGCCATCCTCCCTCACCCTCTCCTGGTACGCAAACTGCAAAGGGTCGAGTGCATGATGGACCTGTGGTCTGAGGTGGTGTAGCAACAGCTGTTCCATGGTCTTCGTGACATGTGATAAATCAATATTTTCAAACAATATAACTTTATATGACATTATGTAAAACTGCAGGGTATGTGAAAAAGAATAAGCAACTCAAACAAAAGAGTAAACACAACTACAAGTCAAGTATTCTTAGACAACTTAATTATACATTTAAGTATCTCGATCAAAAGATTGAGTACAAGAATAGGTCAAAACTTCATATACTTACAATTACACAATTGTATACTTGAGTTATACTGACAGAAAAGTCTATTTCTGATAAGTACATAAAGTATATTTATAAGAAGTACATAAAAAGTGGAATGAAAGTATACTTTCTTATTTTTAGTTTAAAAGAAGTATACTAATAGCACACTTGAAAAAACTTTTTGTAAGGGCACCCAAACATTGTTTACTCTTTCTCTCATACCATTCTATGGCTTTCTTCTGTAGAACACAAAAGAAGATATTTCACATATTTCAACTGTTTTGTCCATATGAGATCAAAAACAGCATTGCATTGACCAAAAAAAAAAAAAAAAAAAAATCACTGAAGAAAGTCATGCAAGATTGGAGTGTTTTTAATTTTCATATTTGTGTTATCTATTTTAACATGCAGTTACATAATTCATACAGTATATTTACTAGCTTGACATTCCACATTTGTAGCTATCTGCAGTGTGGAGAAACAGTAGGCTATTGTCAGTTTGTGAGTGAAGGTGTGGGCGTTAAGCATTGGCATACACCATGCTGCTCTTTTCATCTCACAACATGTAGTTAGATAAAAAACAAGTGACAGCATTGAAAATAACAGCAGATTGTCAGAAAGAGTAGAGTTGACAAGAACAATTTCTCAGCATTGACTGCTACACATGAAACAAACTAATTCAATAACTGTAGATGATACGTTGAAATATGCTGCGTGTACCTGCTGAAACATAAGCAGTCTGTGCTACTTTGCAGCTTGTTTGCTTAAATCATTATTACCTGCATAGTAAAAGTTACCTTAACTTCTTAGAGCTTATGATAAGTTATAAAACTGTGTTGTGCAACATAAAGATATCTATTATTTCAGTGTATGCTTTGCAACAGTGATTTCTAAGTGCTGGGAAGTGCCACCCACTGGTAAGTTTTTTTTTTTTTTTTTTACTAAAAAGTAAATGAAACTCGTGTACTGGCATCATTTGGCACTAAGATTGTGACCTTTAAAGGTGACGTTAAAAGGTGCATCAGCGCCTTGAAAACATTAACATGAGTACCTGGATGTACTGTTGGATTTTATGTTTTTGCATTTCAGCTTTAAAAACTACTTACTCGTTTTTCGTGGCTCAGTCACCGATCCTCACACACGTCTCAGTCGGAGGCACTGTAAAATTAACATGTACATTTGAACAGAACGTTTTCTGCTTTGCTGCTGTTACATGGCAAAAGTTGAACCTACGGACTGGTAAACTGACAGAGGCGAGGTCTGGCTCTCAGCCTGATTTTCCTCAAAATTATGGTAAAACTTGTGTTCTTAATTTTACAAATGTAACACCAAACGATTCAGGTTTGTATTATTGCATTACCTTTTATATGTCAACGGCTATTGTCAGCAGTGGAAGCAGGGTGATCGTAACAGATCACTCTGTTGTGGAACCAAAACTATCCATCTTATACTCATCACATGAACCTGGCTCATCATTAGTAGCACTGCAGTGTCTTGTGACCGGAGTCATCCCGTCTCAAGTGCGGGTGTTCTGGATGATTAAGAAGAAAGTCCGTGTTGGATGGACCGAATCTGCCTGGACAGACGCCACTGATTCAGCCACAGAATTCACACGTGCTCATCTCTCTATTCCTGCAGTGGAGTGGACTGAAGATGATAAAATCCAATGCTTTGCTGAATATAATGGCAAGAACATCTCCAAAACTCTGAAGCGATATGGTGCGTGTAAATGATTAAAGTCTCAGAGAAACATCAGGGCAAATGTTACGCGATATATCTCCTCATTTTATTTACTTTGTATTTTCAGAATTTGGTGATTAGATTATATCGCAGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU268044 lncRNA upstream 26853 11507425 ~ 11507904 (+) True G236362
TU267982 lncRNA upstream 161161 11369095 ~ 11373596 (+) True G236305
TU267952 lncRNA upstream 237756 11296149 ~ 11297001 (+) True G236281
TU267892 lncRNA upstream 255752 11277411 ~ 11279005 (+) True G236222
TU267927 lncRNA upstream 290474 11244063 ~ 11244283 (+) True G236257
TU268060 lncRNA downstream 12440 11549604 ~ 11550696 (+) True G236373
TU268583 lncRNA downstream 60102 11597266 ~ 11597518 (+) True G236822
TU268601 lncRNA downstream 70584 11607748 ~ 11608390 (+) True CI01000054_11600741_11608257
TU268613 lncRNA downstream 77473 11614637 ~ 11614917 (+) True G236848
TU268614 lncRNA downstream 79663 11616827 ~ 11617146 (+) True G236849
CI01000054_11409512_11412290.mRNA mRNA upstream 121626 11409254 ~ 11413131 (+) True CI01000054_11409512_11412290
CI01000054_11289604_11337266.mRNA mRNA upstream 197377 11289604 ~ 11337380 (+) True CI01000054_11289604_11337266
CI01000054_11280613_11285395.mRNA mRNA upstream 249362 11280613 ~ 11285395 (+) True CI01000054_11280613_11285395
CI01000054_11171795_11178974.mRNA mRNA upstream 355648 11171731 ~ 11179109 (+) True CI01000054_11171795_11178974
CI01000054_11162176_11165636.mRNA mRNA upstream 368930 11160059 ~ 11165827 (+) True CI01000054_11162176_11165636
CI01000054_11564820_11568338.mRNA mRNA downstream 27656 11564820 ~ 11568450 (+) False CI01000054_11564820_11568338
CI01000054_11600741_11608257.mRNA mRNA downstream 63342 11600506 ~ 11608362 (+) False CI01000054_11600741_11608257
CI01000054_11633235_11635069.mRNA mRNA downstream 95795 11632959 ~ 11635103 (+) False CI01000054_11633235_11635069
CI01000054_11637464_11637950.mRNA mRNA downstream 100169 11637333 ~ 11638191 (+) True CI01000054_11637464_11637950
CI01000054_11648262_11648786.mRNA mRNA downstream 110795 11647959 ~ 11649495 (+) False CI01000054_11648262_11648786
TU267167 other upstream 1142379 10388136 ~ 10392378 (+) True G235560
TU264679 other upstream 3205169 8305937 ~ 8306053 (+) True G233242
TU264744 other upstream 3229808 8304599 ~ 8304949 (+) True G233306
TU264435 other upstream 3924864 7567523 ~ 7609893 (+) True G233024
TU264265 other upstream 4646254 6888114 ~ 6888503 (+) True G232870
TU267998 other downstream 27812 11564976 ~ 11565121 (+) True G236317
TU268596 other downstream 95812 11632976 ~ 11634064 (+) True CI01000054_11633235_11635069
TU268594 other downstream 110815 11647979 ~ 11649025 (+) False CI01000054_11648262_11648786
TU268595 other downstream 110815 11647979 ~ 11649025 (+) True CI01000054_11648262_11648786
TU268664 other downstream 276524 11813688 ~ 11816475 (+) True G236874

Expression Profile