G237840


Basic Information

Item Value
gene id G237840
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 418925 ~ 419932 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU269823
AATTATTCATACCCTTTGTAAATATGACCAAAGAAGGCTGTGAAAATAAAGCTGCATTGTTCATCCTTTTGATCATTTATTTTAAAAATGTACAAAAATCCAACCGTTCATTGGAGAATAAGAATTTTAAATGGGGGGAAAATCGTTTTGGCAGCAAACACTCAAGATGAGTTTGGTGCACACAGAAATAAAAAGTACCCCATTTGTACAATGAAATATACTGCTGGATCTTTAATGTTGTGGGCCTATTTTTCTGCCGGAGATCCTGGACATCTTGTTCAGATACATGGCATCATGGATTCTATCAAACAGCAAAAGATAAAAAATCAAAACCTGACTGTCCCTGCTAGAAATCCAATAATGGGCTGTGGTTGGATCTTCCATCAGGACAATGATCCAAAACAAACATCAAAATCAACACAAAAATGTGTCACTGAGCACAAAATGAAGCTTCTGCAATGACCATCCCAGTCCCCTGACATGAACCCCATAGAAAATGAGTGGAGTGAACTGAAGAGAAGAGAAGAAGCACCAACATGGAGCTGGGAATCTGAAGGATCTGGAGAGATTCTGTATGAAGGAATGGTCTCTGATATCTTGTCAGGTGTTCTCCAATCCCACCAGGCATTATAGGAGAAAACTCAGAGCTGTTATCTTGGCAAAAGGAGGTTACAAAAAGTATTGAATTCAAGGGTATGATTAATTGTGAGCAATGTGTATGAGAGAAAAACATTTATTTCATAATGAGATTATGAGAGTACTGTATGTGCACAAATATACTGTATATACAGTATGCATGCACAATTGTTGCACAATTGATGAGCTGTACCAACGCTATCTCACGACCAATTCGTACGAATTCGTACGACCTCACTCGTCTAAACCCCAGTGACAGGAAGGTTTAGGGGCGGGGTTTGGGTTAAGTCATTTGTACGAATTCATACAAATTTGGCAACTCGTAAAATATGTACGAATTAGCAAAAAACGCACAAATTCATACGAGTGAGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU269823 True 1008 TUCP 0.38 1 418925 419932

Neighbor

gene id symbol gene type direction distance location
CI01000055_00401437_00402573 GPRC5C coding upstream 16070 399298 ~ 402855 (+)
CI01000055_00388011_00390854 GPR142 coding upstream 27969 387361 ~ 390956 (+)
CI01000055_00334009_00335259 NA coding upstream 83083 334009 ~ 335842 (+)
CI01000055_00257208_00260953 KCNJ2, KCNJ2A coding upstream 157810 256397 ~ 261115 (+)
CI01000055_00252755_00253918 KCNJ16 coding upstream 164390 252755 ~ 254535 (+)
CI01000055_00425804_00426172 OXLD1 coding downstream 5872 425804 ~ 427026 (+)
CI01000055_00442854_00452495 NA coding downstream 22922 442854 ~ 452875 (+)
CI01000055_00455923_00464397 NA coding downstream 35991 455923 ~ 465069 (+)
CI01000055_00467053_00470243 NA coding downstream 47017 466949 ~ 470243 (+)
CI01000055_00470618_00474246 NA coding downstream 50686 470618 ~ 474246 (+)
G237897 NA non-coding upstream 672 417978 ~ 418253 (+)
G237889 NA non-coding upstream 24273 393924 ~ 394652 (+)
G237891 NA non-coding upstream 25246 393440 ~ 393679 (+)
G237890 NA non-coding upstream 26258 391396 ~ 392667 (+)
G237839 NA non-coding upstream 56291 362324 ~ 362634 (+)
G237907 NA non-coding downstream 126898 546830 ~ 547269 (+)
G237832 NA non-coding downstream 319012 738944 ~ 816969 (+)
G237834 NA non-coding downstream 394409 814341 ~ 876707 (+)
G237845 NA non-coding downstream 402396 822328 ~ 823337 (+)
G237934 NA non-coding downstream 404820 824752 ~ 828436 (+)
G237680 NA other upstream 397763 20902 ~ 21162 (+)
G238534 NA other downstream 1248478 1668410 ~ 1669244 (+)
CI01000055_02542526_02542861 NA other downstream 2121190 2542216 ~ 2544118 (+)
G239761 NA other downstream 3742318 4162250 ~ 4213402 (+)
G239755 NA other downstream 3834278 4254210 ~ 4255092 (+)
CI01000055_04265119_04272728 NA other downstream 3844095 4265119 ~ 4273913 (+)

Expression


Co-expression Network