G239761


Basic Information

Item Value
gene id G239761
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 4162250 ~ 4213402 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU272036
GAGCAATATCAGAAAGGAGTTTGAAGTTATCATCATCTACAGTGCATAATATCATCCAAAGATTCAGAGAATCTGGAACAATCTCTGTGCGTAAGGGTCAAGGCCGGAAAACCATACTGGATGCCCATGATCTTCGGGCCCTTAGACGGCACTGCATCACATATAGGAATGCTACTGTAATGGAAATCACAACATGGGCTCAGGAATACTTCCAGAAAACATTGTCGGTGAACACAATCCACCGTGCCATTCGCCGTTGCCGGCTAAAACTCTATAGGTCAAAAAAGAAGCCATATCTAAACATGATCCAGAAGCGCAGGCGTTTTCTCTGGGCCAAGGCTCATTTAAAATGTACTGTGGCAAAGTGGAAAACTGTTCTATGGTCAGACGAATCAAAATTTGAAGTTCTTTTTGGAAAACTGGGACACCATGTCATCCGGACTAAAGAGGACAAGGACAACCCAAGTTGTTATCAGCGCTCAGTTCAGAAGCCTGCATCTCTGATGGTATGGGGTTGCATGAGTGCGTGTGGCATGTGCAGCTTACACATCTGGAAAGGCACCATCAATGCCGAAAGGTATATCCAAGTTCTAGAACAACATATGCTCCCATCCAGATGTCGTCTCTTTCAGGGAAGACCTTGCATTTTCCAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU272036 True 653 TUCP 0.45 3 4162250 4213402

Neighbor

gene id symbol gene type direction distance location
CI01000055_04104413_04124421 AASS coding upstream 37829 4104413 ~ 4124421 (+)
CI01000055_04097751_04100235 FEZF1 coding upstream 61755 4096787 ~ 4100495 (+)
CI01000055_04035172_04094367 CADPS2 coding upstream 67594 4035097 ~ 4094656 (+)
CI01000055_04023182_04033823 CADPS2 coding upstream 128355 4023182 ~ 4033895 (+)
CI01000055_03909546_03911972 NA coding upstream 250071 3908867 ~ 3912179 (+)
CI01000055_04220373_04228785 SLC15A5 coding downstream 6971 4220373 ~ 4228906 (+)
CI01000055_04229735_04231409 NA coding downstream 16333 4229735 ~ 4231602 (+)
CI01000055_04265119_04272728 NA coding downstream 51717 4265119 ~ 4273913 (+)
CI01000055_04288760_04295553 NA coding downstream 75358 4288760 ~ 4295782 (+)
CI01000055_04297863_04299835 NFYBB, NFYB, NFYBA coding downstream 84461 4297863 ~ 4300318 (+)
G239748 NA non-coding upstream 35224 4126527 ~ 4127026 (+)
G239643 NA non-coding upstream 196287 3880366 ~ 3965963 (+)
G239646 NA non-coding upstream 236391 3869732 ~ 3925859 (+)
G239599 NA non-coding upstream 454246 3707467 ~ 3708004 (+)
G239598 NA non-coding upstream 457025 3705024 ~ 3705225 (+)
G239754 NA non-coding downstream 36116 4249518 ~ 4250917 (+)
G239799 NA non-coding downstream 45928 4259330 ~ 4261799 (+)
G239804 NA non-coding downstream 60893 4274295 ~ 4274524 (+)
G239806 NA non-coding downstream 61568 4274970 ~ 4282823 (+)
CI01000055_02542526_02542861 NA other upstream 1618132 2542216 ~ 2544118 (+)
G238534 NA other upstream 2493006 1668410 ~ 1669244 (+)
G237840 NA other upstream 3742318 418925 ~ 419932 (+)
G237680 NA other upstream 4141088 20902 ~ 21162 (+)
G239755 NA other downstream 40808 4254210 ~ 4255092 (+)
CI01000055_05163240_05166231 PIGY, PYURF other downstream 952090 5162990 ~ 5166647 (+)
G240099 NA other downstream 1323116 5525472 ~ 5544153 (+)
CI01000055_05614889_05616453 NA other downstream 1400976 5614065 ~ 5617591 (+)

Expression


Co-expression Network