CI01000055_04265119_04272728


Basic Information

Item Value
gene id CI01000055_04265119_04272728
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 4265119 ~ 4273913 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000055_04265119_04272728.mRNA
GTGACAAACGGAATGTTCAGTGCAACGAGAAAGAAGTTTGGTGAGGGGGTCGAGAGTGACTACCCTGATGAGAGCATGTACTACCAGCCGTCAATGTTCCCGCATCGATCGGAGAAAGACATGCTGCCATCACCCTCGCCGTCATCGTCAGGTCAATTGTCACAGCTTGGTGCGAGTTTGTATGGTCCGCAAAGTGCACTAGGTTTCTCAATGAGCAACATACAACGTATGAGCAACAACAATCCTCAACTGAACCGGAGTTTAACACAAGGCACTCAGTTACCGAGCCATAGCACCCCAACAACAGGCGTCCCAACAATGTCCCTCCACACACCACCTTCGCCGAACAGGGGCATCCTGCCCATGAACTCCAGGAACATGATGAGCTCGCAGGTAGGGCAGGGCATGGGCATGAGCGGCAGGACCAACAGCATGGGCAGCTCTGGCCTGGGCAGCCCGAACCGCAGCTCTCCCAGCATTATCTGCATGCCCAAACAGCAGCCAGCACGCCAGCCATTCACCATCAACAGTATGTCAGGATTTGGAATGGGCCGGAGCCAGGGGTTTGGAATGAACTCCTTATCCAATAACATCTTCAACGGGACAGATGGGAGTGAAAATGTGACAGGAATAGACCTCTCAGAATTCCCAGCACTTGCAGACAGAAGTCGGAGGGAGGGAAACGGCAACCCAACACCTTTGCATAATCCGCTGGCTGGAAGGGCACCCTATGTTGGAATGGTCACAAAGCCATCGAACGAACAGTCGCAGGACTTCTCGATTCACAACGAAGACTTCCCTGCCCTACCCGGGCCCAACTACAAGGACCCAACATTGAGCACGGATGAAAGCAAATCAAACTTGAACTCCTCAGGCAAGGGCAGCTCAAGTGCAGATGGACCCAAATTTCCCGGCGACAAGACATCATCAGCACAGAATAACAACCAGCAAAAGAAAGGGATCCAGGTGTTGCCTGATGGTGAGGCTTTCTAGCAACATGCATGGATGTATTTCAAACAACTTCCAGCTTTGAAAACATGACTGTTGAACAAAACAAGTAATGTGCTTTAAAGGATTAGTTCACTTCTGTATTAAAATTTCCTGATAATTTACTCACCCCCATGTCATCCAAGATGTTCATGTCTTTCTTCATTCAAAAAGAAATTTGAGGAAAACATTCCAGGAGTTTTTCTCCATATAGTGGACTTCAATGGGGACCAATAGGTTGAAGCTCCAAATGTCAGTTTCAGTGCAGCTTCAAAGGGCTCTACACAATCCCAGCCGAGGAATAAGGGTCTTATCTAGTGAAACAATCGGTCATTTTCTAAAAAAAAAAAATGTATATACTTTTTAACCACAAATGCTCGTCTTGCACTAGCTCTGCGATGCGCCACGCATTACGTAATCACGTTAGAAAGTTCACGCATGACATAGACGGAAGTACCGATTCAGTGTTTGCAAAGTCTAAGTCAAACACCCTTTACAGAAAAAAGGTAAAACAACGATGTCGGACGATTTTGAAGTTGGGAGGGGAAAATGAGATGGAGTTTTTCGCCCTACAGTGGTACTTCCGCCTACGTCACGTGTGACTTTTCTAACGTGATGCGTGGCGGATCGCAGAGCAGAAAATGACAGATCGTTTCTCTAGATAAGACCCTTATTCCTCAGCTGGGATCGTGTAGAGCACTTTGAAGCTGCACTGAAACTGTAATTTGGACCTTCAACCCGTTGGTCCCCATTGAAGTCCACTATATGGAGAAAAATCCTGGAATGTTTTCCTCAAAAACCTTAATTTATTTTCAACTGAAGAAAGAAAGACATGAACATCTTGGATGACATGGGGGTGAGTAAATTATCAGGAAATTTGAATTCTGAAGTGAACTAATCCTTTAATGAAGCAAGAATCTGTTTAGGCAGGTTTCAATGCACCAGTCTGGGTTTCCATTTTAAGTTTATATATTTAATAAAATATAATAATAATACTTCAATCCCCATGAAAAGTAATGGAAAACAATATCTTAAATCATAATTAAATATTGGACATTTTTATTGTGAGTAAAAAAAACCTGTTTATTTAAATATAAAAATGTAAATATAAAATAATTTAAAATGGATGTAAAGTATTTTAAAAGACAATCATTCTGTATTATTAAAAAACAATAACTAGTTTTTATAGTA
>TU272089
AAGGGCTCTACACAATCCCAGCCGAGGAATAAGGGTCTTATCTAGTGAAACAATCGGTCATTTTCTAAAAAAAAAAAATGTATATACTTTTTAACCACAAATGCTCGTCTTGCACTAGCTCTGCGATGCGCCACGCATTACGTAATCACGTTAGAAAGTTCACGCATGACATAGACGGAAGTACCGATTCAGTGTTTGCAAAGTCTAAGTCAAACACCCTTTACAGAAAAAAGGTAAAACAACGATGTCGGACGATTTTGAAGTTGGGAGGGGAAAATGAGATGGAGTTTTTCGCCCTACAGTGGTACTTCCGCCTACGTCACGTGTGACTTTTCTAACGTGATGCGTGGCGGATCGCAGAGCAGAAAATGACAGATCGTTTCTCTAGATAAGACCCTTATTCCTCAGCTGGGATCGTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000055_04265119_04272728.mRNA False 2178 mRNA 0.43 8 4265119 4273913
TU272089 True 420 lncRNA 0.43 1 4272996 4273415

Neighbor

gene id symbol gene type direction distance location
CI01000055_04229735_04231409 NA coding upstream 33517 4229735 ~ 4231602 (+)
CI01000055_04220373_04228785 SLC15A5 coding upstream 36213 4220373 ~ 4228906 (+)
CI01000055_04104413_04124421 AASS coding upstream 140698 4104413 ~ 4124421 (+)
CI01000055_04097751_04100235 FEZF1 coding upstream 164624 4096787 ~ 4100495 (+)
CI01000055_04035172_04094367 CADPS2 coding upstream 170463 4035097 ~ 4094656 (+)
CI01000055_04288760_04295553 NA coding downstream 14847 4288760 ~ 4295782 (+)
CI01000055_04297863_04299835 NFYBB, NFYB, NFYBA coding downstream 23950 4297863 ~ 4300318 (+)
CI01000055_04312501_04314406 NA coding downstream 38588 4312501 ~ 4315015 (+)
CI01000055_04315348_04320581 NA coding downstream 41130 4315043 ~ 4320581 (+)
CI01000055_04331311_04334095 NA coding downstream 57398 4331311 ~ 4334250 (+)
G239799 NA non-coding upstream 3320 4259330 ~ 4261799 (+)
G239754 NA non-coding upstream 14202 4249518 ~ 4250917 (+)
G239748 NA non-coding upstream 138093 4126527 ~ 4127026 (+)
G239643 NA non-coding upstream 299156 3880366 ~ 3965963 (+)
G239646 NA non-coding upstream 339260 3869732 ~ 3925859 (+)
G239804 NA non-coding downstream 382 4274295 ~ 4274524 (+)
G239806 NA non-coding downstream 1057 4274970 ~ 4282823 (+)
G239827 NA non-coding downstream 108777 4382690 ~ 4385394 (+)
G239856 NA non-coding downstream 127766 4401679 ~ 4401962 (+)
G239887 NA non-coding downstream 204121 4478034 ~ 4478303 (+)
G239755 NA other upstream 10027 4254210 ~ 4255092 (+)
G239761 NA other upstream 51717 4162250 ~ 4213402 (+)
CI01000055_02542526_02542861 NA other upstream 1721001 2542216 ~ 2544118 (+)
G238534 NA other upstream 2595875 1668410 ~ 1669244 (+)
G237840 NA other upstream 3845187 418925 ~ 419932 (+)
CI01000055_05163240_05166231 PIGY, PYURF other downstream 891579 5162990 ~ 5166647 (+)
G240099 NA other downstream 1262605 5525472 ~ 5544153 (+)
CI01000055_05614889_05616453 NA other downstream 1340465 5614065 ~ 5617591 (+)
CI01000055_06087070_06088629 ETFRF1, LYRM5, LYRM5B other downstream 1812912 6087034 ~ 6088759 (+)
G240344 NA other downstream 1889947 6163860 ~ 6164011 (+)
CI01000055_04265119_04272728 NA other upstream 281 4265119 ~ 4273913 (+)

Expression


Co-expression Network