RNA id: CI01000055_04265119_04272728.mRNA



Basic Information


Item Value
RNA id CI01000055_04265119_04272728.mRNA
length 2178
RNA type mRNA
GC content 0.43
exon number 8
gene id CI01000055_04265119_04272728
representative False

Chromosome Information


Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 4265119 ~ 4273913 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTGACAAACGGAATGTTCAGTGCAACGAGAAAGAAGTTTGGTGAGGGGGTCGAGAGTGACTACCCTGATGAGAGCATGTACTACCAGCCGTCAATGTTCCCGCATCGATCGGAGAAAGACATGCTGCCATCACCCTCGCCGTCATCGTCAGGTCAATTGTCACAGCTTGGTGCGAGTTTGTATGGTCCGCAAAGTGCACTAGGTTTCTCAATGAGCAACATACAACGTATGAGCAACAACAATCCTCAACTGAACCGGAGTTTAACACAAGGCACTCAGTTACCGAGCCATAGCACCCCAACAACAGGCGTCCCAACAATGTCCCTCCACACACCACCTTCGCCGAACAGGGGCATCCTGCCCATGAACTCCAGGAACATGATGAGCTCGCAGGTAGGGCAGGGCATGGGCATGAGCGGCAGGACCAACAGCATGGGCAGCTCTGGCCTGGGCAGCCCGAACCGCAGCTCTCCCAGCATTATCTGCATGCCCAAACAGCAGCCAGCACGCCAGCCATTCACCATCAACAGTATGTCAGGATTTGGAATGGGCCGGAGCCAGGGGTTTGGAATGAACTCCTTATCCAATAACATCTTCAACGGGACAGATGGGAGTGAAAATGTGACAGGAATAGACCTCTCAGAATTCCCAGCACTTGCAGACAGAAGTCGGAGGGAGGGAAACGGCAACCCAACACCTTTGCATAATCCGCTGGCTGGAAGGGCACCCTATGTTGGAATGGTCACAAAGCCATCGAACGAACAGTCGCAGGACTTCTCGATTCACAACGAAGACTTCCCTGCCCTACCCGGGCCCAACTACAAGGACCCAACATTGAGCACGGATGAAAGCAAATCAAACTTGAACTCCTCAGGCAAGGGCAGCTCAAGTGCAGATGGACCCAAATTTCCCGGCGACAAGACATCATCAGCACAGAATAACAACCAGCAAAAGAAAGGGATCCAGGTGTTGCCTGATGGTGAGGCTTTCTAGCAACATGCATGGATGTATTTCAAACAACTTCCAGCTTTGAAAACATGACTGTTGAACAAAACAAGTAATGTGCTTTAAAGGATTAGTTCACTTCTGTATTAAAATTTCCTGATAATTTACTCACCCCCATGTCATCCAAGATGTTCATGTCTTTCTTCATTCAAAAAGAAATTTGAGGAAAACATTCCAGGAGTTTTTCTCCATATAGTGGACTTCAATGGGGACCAATAGGTTGAAGCTCCAAATGTCAGTTTCAGTGCAGCTTCAAAGGGCTCTACACAATCCCAGCCGAGGAATAAGGGTCTTATCTAGTGAAACAATCGGTCATTTTCTAAAAAAAAAAAATGTATATACTTTTTAACCACAAATGCTCGTCTTGCACTAGCTCTGCGATGCGCCACGCATTACGTAATCACGTTAGAAAGTTCACGCATGACATAGACGGAAGTACCGATTCAGTGTTTGCAAAGTCTAAGTCAAACACCCTTTACAGAAAAAAGGTAAAACAACGATGTCGGACGATTTTGAAGTTGGGAGGGGAAAATGAGATGGAGTTTTTCGCCCTACAGTGGTACTTCCGCCTACGTCACGTGTGACTTTTCTAACGTGATGCGTGGCGGATCGCAGAGCAGAAAATGACAGATCGTTTCTCTAGATAAGACCCTTATTCCTCAGCTGGGATCGTGTAGAGCACTTTGAAGCTGCACTGAAACTGTAATTTGGACCTTCAACCCGTTGGTCCCCATTGAAGTCCACTATATGGAGAAAAATCCTGGAATGTTTTCCTCAAAAACCTTAATTTATTTTCAACTGAAGAAAGAAAGACATGAACATCTTGGATGACATGGGGGTGAGTAAATTATCAGGAAATTTGAATTCTGAAGTGAACTAATCCTTTAATGAAGCAAGAATCTGTTTAGGCAGGTTTCAATGCACCAGTCTGGGTTTCCATTTTAAGTTTATATATTTAATAAAATATAATAATAATACTTCAATCCCCATGAAAAGTAATGGAAAACAATATCTTAAATCATAATTAAATATTGGACATTTTTATTGTGAGTAAAAAAAACCTGTTTATTTAAATATAAAAATGTAAATATAAAATAATTTAAAATGGATGTAAAGTATTTTAAAAGACAATCATTCTGTATTATTAAAAAACAATAACTAGTTTTTATAGTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU272085 lncRNA upstream 3320 4259330 ~ 4261799 (+) True G239799
TU272028 lncRNA upstream 14202 4249518 ~ 4250917 (+) True G239754
TU272021 lncRNA upstream 138093 4126527 ~ 4127026 (+) True G239748
TU271891 lncRNA upstream 299156 3880366 ~ 3965963 (+) False G239643
TU271893 lncRNA upstream 299156 3880366 ~ 3965963 (+) False G239643
TU272090 lncRNA downstream 382 4274295 ~ 4274524 (+) True G239804
TU272093 lncRNA downstream 1057 4274970 ~ 4278760 (+) False G239806
TU272095 lncRNA downstream 1057 4274970 ~ 4279574 (+) False G239806
TU272096 lncRNA downstream 8121 4282034 ~ 4282823 (+) True G239806
TU272119 lncRNA downstream 108777 4382690 ~ 4385394 (+) True G239827
CI01000055_04229735_04231409.mRNA mRNA upstream 33517 4229735 ~ 4231602 (+) True CI01000055_04229735_04231409
CI01000055_04220373_04228785.mRNA mRNA upstream 36213 4220373 ~ 4228906 (+) True CI01000055_04220373_04228785
CI01000055_04104413_04124421.mRNA mRNA upstream 140698 4104413 ~ 4124421 (+) True CI01000055_04104413_04124421
CI01000055_04097751_04100235.mRNA mRNA upstream 164624 4096787 ~ 4100495 (+) True CI01000055_04097751_04100235
CI01000055_04035172_04094367.mRNA mRNA upstream 170463 4035097 ~ 4094656 (+) True CI01000055_04035172_04094367
CI01000055_04288760_04295553.mRNA mRNA downstream 14847 4288760 ~ 4295782 (+) True CI01000055_04288760_04295553
CI01000055_04297863_04299835.mRNA mRNA downstream 23950 4297863 ~ 4300318 (+) True CI01000055_04297863_04299835
CI01000055_04312501_04314406.mRNA mRNA downstream 38588 4312501 ~ 4315015 (+) True CI01000055_04312501_04314406
CI01000055_04315348_04320581.mRNA mRNA downstream 41130 4315043 ~ 4320581 (+) True CI01000055_04315348_04320581
CI01000055_04331311_04334095.mRNA mRNA downstream 57398 4331311 ~ 4334250 (+) True CI01000055_04331311_04334095
TU272029 other upstream 10027 4254210 ~ 4255092 (+) True G239755
TU272036 other upstream 51717 4162250 ~ 4213402 (+) True G239761
TU271353 other upstream 1721001 2541122 ~ 2541235 (+) True G239173
TU271351 other upstream 1721001 2541201 ~ 2541235 (+) True G239173
TU270647 other upstream 2595875 1668410 ~ 1669244 (+) True G238534
TU272472 other downstream 891579 5165492 ~ 5166647 (+) True CI01000055_05163240_05166231
TU272428 other downstream 1262605 5536518 ~ 5543812 (+) True G240099
TU272585 other downstream 1340465 5614378 ~ 5616353 (+) False CI01000055_05614889_05616453
TU272586 other downstream 1340719 5614632 ~ 5617591 (+) True CI01000055_05614889_05616453
TU272705 other downstream 1812912 6086825 ~ 6086887 (+) True G240319

Expression Profile