RNA id: CI01000055_04229735_04231409.mRNA


Basic Information

Item Value
RNA id CI01000055_04229735_04231409.mRNA
length 570
RNA type mRNA
GC content 0.43
exon number 3
gene id CI01000055_04229735_04231409
representative True

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 4229735 ~ 4231602 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGGACCGTCGCAACCGCACGAGATCCGCCTTCGTTGCTACGGACTCGCGTCTGTTTCTCTCAACATGGACCTGCCTGAACCCATACGGCGACGGCTTGGAGATTTCTCCAGAACCGTATTTGTGGACCAAAGCCGAACGCAACCCTCTCCTGAAGAACACGCTAATTTTTTAAGCCAGTATTATTACAAGTTCATCCTGATCACAATTCTTATTTTAATGACCCTGATTGAGGCCATCAGACTCTACCTGGGAAATGTTGGAAATCTGCAAGAAAAGATCCTTTTTGGATTTGTTGCCCTGCGTGCTATGGTCCGACACACTGAAAGTCGCTTCCATTTGCGACAGTTTGATGGGATTCAGGAATTAAGAACGTGACGAGACTCCTTCACTGATGAACTGGGTTAAATATTCTCTGTGGTAACAAAAAAAAAAAAAAGACTATAAAGATGGCAGTGGTAACCACTAGAGGACACATATCAGTCATTGAGCTGGATTGTTACTGCAGATGTCTTGGTGCCTTATTTTATACAAACAATCTTGCCTTGTATTATATTTTGTATGTGGATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272021 lncRNA upstream 102709 4126527 ~ 4127026 (+) True G239748
TU271891 lncRNA upstream 263772 3880366 ~ 3965963 (+) False G239643
TU271893 lncRNA upstream 263772 3880366 ~ 3965963 (+) False G239643
TU271895 lncRNA upstream 263772 3936542 ~ 3965963 (+) True G239643
TU271899 lncRNA upstream 303876 3869732 ~ 3925859 (+) True G239646
TU272028 lncRNA downstream 17916 4249518 ~ 4250917 (+) True G239754
TU272085 lncRNA downstream 27728 4259330 ~ 4261799 (+) True G239799
TU272089 lncRNA downstream 41394 4272996 ~ 4273415 (+) True CI01000055_04265119_04272728
TU272090 lncRNA downstream 42693 4274295 ~ 4274524 (+) True G239804
TU272093 lncRNA downstream 43368 4274970 ~ 4278760 (+) False G239806
CI01000055_04220373_04228785.mRNA mRNA upstream 829 4220373 ~ 4228906 (+) True CI01000055_04220373_04228785
CI01000055_04104413_04124421.mRNA mRNA upstream 105314 4104413 ~ 4124421 (+) True CI01000055_04104413_04124421
CI01000055_04097751_04100235.mRNA mRNA upstream 129240 4096787 ~ 4100495 (+) True CI01000055_04097751_04100235
CI01000055_04035172_04094367.mRNA mRNA upstream 135079 4035097 ~ 4094656 (+) True CI01000055_04035172_04094367
CI01000055_04023182_04033823.mRNA mRNA upstream 195840 4023182 ~ 4033895 (+) True CI01000055_04023182_04033823
CI01000055_04265119_04272728.mRNA mRNA downstream 33517 4265119 ~ 4273913 (+) False CI01000055_04265119_04272728
CI01000055_04288760_04295553.mRNA mRNA downstream 57158 4288760 ~ 4295782 (+) True CI01000055_04288760_04295553
CI01000055_04297863_04299835.mRNA mRNA downstream 66261 4297863 ~ 4300318 (+) True CI01000055_04297863_04299835
CI01000055_04312501_04314406.mRNA mRNA downstream 80899 4312501 ~ 4315015 (+) True CI01000055_04312501_04314406
CI01000055_04315348_04320581.mRNA mRNA downstream 83441 4315043 ~ 4320581 (+) True CI01000055_04315348_04320581
TU272036 other upstream 16333 4162250 ~ 4213402 (+) True G239761
TU271353 other upstream 1685617 2541122 ~ 2541235 (+) True G239173
TU271351 other upstream 1685617 2541201 ~ 2541235 (+) True G239173
TU270647 other upstream 2560491 1668410 ~ 1669244 (+) True G238534
TU269823 other upstream 3809803 418925 ~ 419932 (+) True G237840
TU272029 other downstream 22608 4254210 ~ 4255092 (+) True G239755
TU272088 other downstream 32425 4264027 ~ 4264066 (+) True G239802
TU272472 other downstream 933890 5165492 ~ 5166647 (+) True CI01000055_05163240_05166231
TU272428 other downstream 1304916 5536518 ~ 5543812 (+) True G240099
TU272585 other downstream 1382776 5614378 ~ 5616353 (+) False CI01000055_05614889_05616453

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00047926 True 576 mRNA 0.43 5 NC_007136.7 28589669 ~ 28593540 (+)