RNA id: TU272029


Basic Information

Item Value
RNA id TU272029
length 550
RNA type TUCP
GC content 0.55
exon number 3
gene id G239755
representative True

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 4254210 ~ 4255092 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTGAGTGCTCTGGAGTGGCCCATCCCGCCTTGTCTGAGCCCCGGCTGCTCGAGTCAGGACTTGGCGCACGGAGGAAGGCCGTCTTCCATTTGCTCTTCTTCAAGAGTAAATTACGAGGACCATCCTGACTAGCTTCAGAACAGGGGCTCGAACCACCGGCACTGCCGTCACCTTCCTCCAAGGCACGAAGCTCAGCCTTTTTTCCTTTCTAGTGCTAGTTCTAGTTCCATGGTGTCTTCTTCTGCCTCCTCCTCCCTGTCGGAAGATTCTGCTGAGTGGTTCCTGCTGCGCTGGTTACTCTGGCTGTCCGTGTCTCGGAGAGCTGGGGAGTCCAAAGACGGAGTGCCTTCTCCCTCTAGTTCCTGGGCCGCTTCTACGGTCTCCTCTGTGGCCAGCACCTTCTTTCTCCACTTCTCCTCTGCCTCCTTCACCTCTTCTGGGATGAGAGGAGCAAGAAGAGTAGCGGCCACTCCTCTCCTCTCTTCTTCCTCGCTGGTCAAAGCCACAACACTCTCGATTACTTCCTTTCTTTTTGGTTTCTCTCTTAGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272028 lncRNA upstream 3293 4249518 ~ 4250917 (+) True G239754
TU272021 lncRNA upstream 127184 4126527 ~ 4127026 (+) True G239748
TU271891 lncRNA upstream 288247 3880366 ~ 3965963 (+) False G239643
TU271893 lncRNA upstream 288247 3880366 ~ 3965963 (+) False G239643
TU271895 lncRNA upstream 288247 3936542 ~ 3965963 (+) True G239643
TU272085 lncRNA downstream 4238 4259330 ~ 4261799 (+) True G239799
TU272089 lncRNA downstream 17904 4272996 ~ 4273415 (+) True CI01000055_04265119_04272728
TU272090 lncRNA downstream 19203 4274295 ~ 4274524 (+) True G239804
TU272093 lncRNA downstream 19878 4274970 ~ 4278760 (+) False G239806
TU272095 lncRNA downstream 19878 4274970 ~ 4279574 (+) False G239806
CI01000055_04229735_04231409.mRNA mRNA upstream 22608 4229735 ~ 4231602 (+) True CI01000055_04229735_04231409
CI01000055_04220373_04228785.mRNA mRNA upstream 25304 4220373 ~ 4228906 (+) True CI01000055_04220373_04228785
CI01000055_04104413_04124421.mRNA mRNA upstream 129789 4104413 ~ 4124421 (+) True CI01000055_04104413_04124421
CI01000055_04097751_04100235.mRNA mRNA upstream 153715 4096787 ~ 4100495 (+) True CI01000055_04097751_04100235
CI01000055_04035172_04094367.mRNA mRNA upstream 159554 4035097 ~ 4094656 (+) True CI01000055_04035172_04094367
CI01000055_04265119_04272728.mRNA mRNA downstream 10027 4265119 ~ 4273913 (+) False CI01000055_04265119_04272728
CI01000055_04288760_04295553.mRNA mRNA downstream 33668 4288760 ~ 4295782 (+) True CI01000055_04288760_04295553
CI01000055_04297863_04299835.mRNA mRNA downstream 42771 4297863 ~ 4300318 (+) True CI01000055_04297863_04299835
CI01000055_04312501_04314406.mRNA mRNA downstream 57409 4312501 ~ 4315015 (+) True CI01000055_04312501_04314406
CI01000055_04315348_04320581.mRNA mRNA downstream 59951 4315043 ~ 4320581 (+) True CI01000055_04315348_04320581
TU272036 other upstream 40808 4162250 ~ 4213402 (+) True G239761
TU271353 other upstream 1710092 2541122 ~ 2541235 (+) True G239173
TU271351 other upstream 1710092 2541201 ~ 2541235 (+) True G239173
TU270647 other upstream 2584966 1668410 ~ 1669244 (+) True G238534
TU269823 other upstream 3834278 418925 ~ 419932 (+) True G237840
TU272088 other downstream 8935 4264027 ~ 4264066 (+) True G239802
TU272472 other downstream 910400 5165492 ~ 5166647 (+) True CI01000055_05163240_05166231
TU272428 other downstream 1281426 5536518 ~ 5543812 (+) True G240099
TU272585 other downstream 1359286 5614378 ~ 5616353 (+) False CI01000055_05614889_05616453
TU272586 other downstream 1359540 5614632 ~ 5617591 (+) True CI01000055_05614889_05616453

Expression Profile