CI01000055_04288760_04295553


Basic Information

Item Value
gene id CI01000055_04288760_04295553
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 4288760 ~ 4295782 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000055_04288760_04295553.mRNA
ATGGGATCCATCACTGACGCAAACCAGAAGGAGTGTCAGCTGACCTCAGCTCACCTGCCATCCAGAGAAAATGGGCATCAGTCTATACCAGAGAGCAGAAGACCTGACATAACATCAAGCTTCACTCGTATCTGCAGTAAGGAGTTTTCAGAGTCCGACCCCCTGCTTCCCACTGCATTTTATGGGACAACATTAGCCTCTGGGACCATATCGCAGGATGAGCCGCAGAATATTCATGGCCAGGAGATGCCAAGTGAGTCGATCCGGGCCATGGTGATTCAGATTTTGGTTCCATTCCTCCTGGCGGGTTTTGGAACAGTGCTGGCGGGGATGTTGCTGGACTTAGTGCAGCACTGGGACGTTTTCAGTAATGTGACAGAGATCTTCATCCTTGTCCCACCTCTACTGGGCCTAAAGGGGAATCTGGAGATGACACTGGCATCAAGACTCTCCACTGCTGTAAATGTTGGCAGAATGAACTCTTCAAGTGAGAAGTGGAACCTGATCATTGGAAATCTTGCCCTCAAACAGGTACAAGCTACAGTTCTGGGCTTTCTGGCTGCTCTTGTAGCATCGGCTCTTGGATGGATCCTGGAAGAGGAGCTCATTATGAACCATGTAGCTCTGCTTTGCTGTTGCAGCGTGATGACAGCGTTCACAGCATCCCTGCTGCAGGGGATCTTAATGGTTGGTGTGATTATTGGATCCAAGAAGGTGGGCGTCAACCCTGACAACATAGCCACGCCCCTTGCTGCCAGTTTTGGTGACATCATCACACTTGGACTGCTTGCCATCATTAGTCAAGGCTTTTTTTACTGCATGGAACCTTACCCTTATATTACCTACCTGGTATGTATTGTTTTCCTGTGCCTGACGCCGGTATGGGTCATTATTTCACGTCGTCACCCTGAAAGCCAAAAACTGCTGATTTCCAGCTGGGAGCCAATAATTACCGCAATGGTGATCAGCAGTCTTGGAGGACTGATTCTGGACCGAACCATCGCAGATCCAATGCTTGAGGGAGTTGTTCTCTACACTCCTGTTATAAATGGTGTTGGTGGTAATCTGGTTTCTATCCAGGCTAGTCGTATAGCCACGTATCTTCATTTTCACTCTCTGCTGGGCGAACTTCCAGATGACTCTAAAGGATGTTACTGCCCCTGCAGCAGCTTTTGGGCCACAGCGCCGAATGGAAGATCAGCACAGGTGCTGCTCATGTTGACCATCCCAGGTCACCTGGTCTTCGTCTACACCATTTACTTAATACAAGGCAGCCCGACTCCACCCACTGCTGTCTTCATTTCCTTCTATTTGGTGTTTCTCCTGCTGGGCATCACTGATGTGATGGTTCACTGCTTGTGGAAATGCGGCAGGGACCCTGATAGCTTCTCCATCCCATATCTGACGGCTCTAGCGGATTTGTTGGGCACTGCCTTTCTGGCACTGTGTTTTCTTCTAATGTCACTGGTGACATAAATGTTGAAATGACATTGTCATATTTCATTAAACAGGTTAGATCTAACCTATCACCACTATCTGATGTGCTGACCTACATTTTTGGCATTTCTCTGCACAGTTGAACATTAGTGAATGACTTTACTTGAAATATTTGAAATATCAGTCTCTCCATACATGCAGTTCAATGAACCACACATGCTACCTCATGTGACAATAGTACTTCAAGTCACGTGACCATGTTCATTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000055_04288760_04295553.mRNA True 1705 mRNA 0.48 10 4288760 4295782

Neighbor

gene id symbol gene type direction distance location
CI01000055_04265119_04272728 NA coding upstream 14847 4265119 ~ 4273913 (+)
CI01000055_04229735_04231409 NA coding upstream 57158 4229735 ~ 4231602 (+)
CI01000055_04220373_04228785 SLC15A5 coding upstream 59854 4220373 ~ 4228906 (+)
CI01000055_04104413_04124421 AASS coding upstream 164339 4104413 ~ 4124421 (+)
CI01000055_04097751_04100235 FEZF1 coding upstream 188265 4096787 ~ 4100495 (+)
CI01000055_04297863_04299835 NFYBB, NFYB, NFYBA coding downstream 2081 4297863 ~ 4300318 (+)
CI01000055_04312501_04314406 NA coding downstream 16719 4312501 ~ 4315015 (+)
CI01000055_04315348_04320581 NA coding downstream 19261 4315043 ~ 4320581 (+)
CI01000055_04331311_04334095 NA coding downstream 35529 4331311 ~ 4334250 (+)
CI01000055_04334410_04337430 NA coding downstream 38522 4334304 ~ 4337430 (+)
G239806 NA non-coding upstream 5937 4274970 ~ 4282823 (+)
G239804 NA non-coding upstream 14236 4274295 ~ 4274524 (+)
G239799 NA non-coding upstream 26961 4259330 ~ 4261799 (+)
G239754 NA non-coding upstream 37843 4249518 ~ 4250917 (+)
G239827 NA non-coding downstream 86908 4382690 ~ 4385394 (+)
G239856 NA non-coding downstream 105897 4401679 ~ 4401962 (+)
G239887 NA non-coding downstream 182252 4478034 ~ 4478303 (+)
G239889 NA non-coding downstream 183657 4479439 ~ 4479673 (+)
G239890 NA non-coding downstream 186509 4482291 ~ 4482790 (+)
G239755 NA other upstream 33668 4254210 ~ 4255092 (+)
G239761 NA other upstream 75358 4162250 ~ 4213402 (+)
CI01000055_02542526_02542861 NA other upstream 1744642 2542216 ~ 2544118 (+)
G238534 NA other upstream 2619516 1668410 ~ 1669244 (+)
CI01000055_05163240_05166231 PIGY, PYURF other downstream 869710 5162990 ~ 5166647 (+)
G240099 NA other downstream 1240736 5525472 ~ 5544153 (+)
CI01000055_05614889_05616453 NA other downstream 1318596 5614065 ~ 5617591 (+)
CI01000055_06087070_06088629 ETFRF1, LYRM5, LYRM5B other downstream 1791043 6087034 ~ 6088759 (+)
G240344 NA other downstream 1868078 6163860 ~ 6164011 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_024176 slc41a2a coding NC_007136.7 CM002909.2 28772632 ~ 28808764 (+)