RNA id: CI01000055_04097751_04100235.mRNA


Basic Information

Item Value
RNA id CI01000055_04097751_04100235.mRNA
length 2307
RNA type mRNA
GC content 0.46
exon number 4
gene id CI01000055_04097751_04100235
representative True

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 4096787 ~ 4100495 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTATAAAAATAGAAATGAACAGGGCAATATGCTACATTTGCCTGCATTTAAAACGCATTAGCCTATATGTATTTGTTCTTTTTTATTTACTTTTTCGAATTAAGATTCGAAATATGTATTTTCCATTTTGAATTAAAATATTTTTTAACAAGTTAATTCGATTACCACATTCGTGCACAAAATGTTCATGTTCTTAGTGTTATGGCTAGTGTGGTTTAATTTATAGTTTATAGGGAAAAGTTCAGTTGTAAATGTCTAAACTAATTTGTGGCAGGTAAAATAAGAGTATTACAACGAAAAAAAACGGAGTTACAGACGTTTAAACAAAATCCCTAAAATTGTAGTAATGTCCATTAAGTCCTAATTTGTGTTCGCTTTTATGCTAGTTCACGCGGCACGTCTTAGTCAAAAAGCAGCCCTAAATAACTCCTAAATAAAGTATGTTGTTATCAAAATCGCCCTCCAGTCCTACCCAAAAAGAAAAAAAGCGGTTTCAAAGTTTTCATATGTCAAATGTTGACAAACATGATGCATGCGCGCGCCTGTCATCGTGCGCGAGGTACAATGATGTCACAGCGAGGCGCGAGGAGACCGGAGATTCGCCCAGCGCTTTACAGTGCTAATAAAGAGCACCTTCTTGAGTTAGTCACCCACAGCAGTGTGTAGGACAAGTGCAGGGAGAGAGAAAAAAGCCGCTCTAGTGATTGATATAACTAAATCGAGCATCTGGGCTGCTTTACGTGTCTTTGACGTGCGCGCGTGGTGAGCCCTGAGTTGAGCTATTGACAAAACACTCTTTATTGAGCAATCCGGGGCGGACATAAGTGCTGATTGTCCGCAATTGACAAGCAGCGGAGAAGCCAGGGGGCCTTTGCGCTTGATGATGTCTTTTCTTGCGGGTCACTGAGAGGAATCAAACTTATCTACAAAAGGAGGACACAGGTACAGGTGCTGCGCTCGAGTCATGGACAGCGCGCTGTACCACTCAGCGGGAATATTCGGCGCCCCTTCGGCTCCGACTGGAGGAAGCATGATCGCGAGCTCCAAACCTCTCGCTTTTTCGATCGAAAGGATTATGGCCAGGACGCCCGAACCAAAGTCAATACCGTTCCCGAACTTGTTCCACGCTCCCGTGGGGAAAGCGGAGCCCAAGCAGTCTCCCGCCCCGCTGCACTGCATGATCCCCCTCATGCCGCTCGCCTGCGAGCCGCCTCACAAACTTCACATTAATGGATTAGACCACCCTGACGCTTTTTCGCACAACGCGAACGAGTTGCTGAGCATCGGGTTGAATTATAAGAACGAGCAGCAAGACGCGACCCCGGCCATCGGACAGTACAAACTCTTCCGGCCGCGCGTGGTCAACCAGTCGTCGTTCCACGCGATGGGCGCCGCCGTCTGTTACCTGAACTGCGGGGAAAGCGCGTGTCCGCCTCACGCGGGTCTGGTGAACCTGCACCCCATGGCGTCGTACCTCCTCAACACGCCACTGCACGCGCGCCAGAAGAGCCTGTTTTCCTCGGAGAAGAGCAAACCGGGCGCCGCTGCGGACAGGTGTCCTCCTGGCTTGTCTTTTAAAGAGCTTTCTCACTCTCACCTGCATCATTACATGAAGGAGAGCGCGCACATCTTGTCGGAGAAGTTGTTCAAGAACTCCGCGGCCAAATTAAACAGCGGGTCTCCTCAAACCAAACCAAAGGTGTTCACCTGTGAAGTTTGTGGCAAGGTGTTCAACGCGCACTATAATTTAACGCGTCACATGCCGGTTCACACTGGCGCCAGACCGTTCGTGTGCAAAGTGTGCGGCAAAGGGTTCAGACAAGCGAGCACTCTGTGTCGCCATAAAATCATCCACACTCAGGAAAAACCGCATAAATGCAACCAATGTGGCAAAGCTTTCAACCGAAGTTCAACTCTCAACACTCATACACGAATTCACGCCGGATACAAACCCTTCATTTGTGAATTCTGCGGGAAAGGATTTCATCAGAAAGATTATTACATGATTCTTTTTACTCTCAGGGTAACGACAGTCTTATTTATTTGAAACTGCTGTTGTCATTTACTTAAAGAGAGTAATTGAAACCCGTATATGGAACATTGATTCTCGTGACCGCTGTGTATTTTAAACTCCATTTTATATGTTTATTATTTATACAGTTCTTTGTATTAGCTATACTGTTTGCCGACTGTAAACGTTTTGTTAAATCAATGTGAATATATATGCAAGGCTTGTTGTATATTTCCAATGACATCTGATCTGTCAAAAAGATTATAAAACATATGATAAAAGGGTTGGGAATCCAA

Function

GO:

id name namespace
GO:0001227 DNA-binding transcription repressor activity, RNA polymerase II-specific molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271891 lncRNA upstream 130824 3880366 ~ 3965963 (+) False G239643
TU271893 lncRNA upstream 130824 3880366 ~ 3965963 (+) False G239643
TU271895 lncRNA upstream 130824 3936542 ~ 3965963 (+) True G239643
TU271899 lncRNA upstream 170928 3869732 ~ 3925859 (+) True G239646
TU271841 lncRNA upstream 388783 3707467 ~ 3708004 (+) True G239599
TU272021 lncRNA downstream 26032 4126527 ~ 4127026 (+) True G239748
TU272028 lncRNA downstream 149023 4249518 ~ 4250917 (+) True G239754
TU272085 lncRNA downstream 158835 4259330 ~ 4261799 (+) True G239799
TU272089 lncRNA downstream 172501 4272996 ~ 4273415 (+) True CI01000055_04265119_04272728
TU272090 lncRNA downstream 173800 4274295 ~ 4274524 (+) True G239804
CI01000055_04035172_04094367.mRNA mRNA upstream 2131 4035097 ~ 4094656 (+) True CI01000055_04035172_04094367
CI01000055_04023182_04033823.mRNA mRNA upstream 62892 4023182 ~ 4033895 (+) True CI01000055_04023182_04033823
CI01000055_03909546_03911972.mRNA mRNA upstream 184608 3908867 ~ 3912179 (+) True CI01000055_03909546_03911972
CI01000055_03903278_03905608.mRNA mRNA upstream 191053 3903090 ~ 3905734 (+) True CI01000055_03903278_03905608
CI01000055_03795753_03805149.mRNA mRNA upstream 290008 3795703 ~ 3806779 (+) True CI01000055_03795753_03805149
CI01000055_04104413_04124421.mRNA mRNA downstream 3918 4104413 ~ 4124421 (+) True CI01000055_04104413_04124421
CI01000055_04220373_04228785.mRNA mRNA downstream 119878 4220373 ~ 4228906 (+) True CI01000055_04220373_04228785
CI01000055_04229735_04231409.mRNA mRNA downstream 129240 4229735 ~ 4231602 (+) True CI01000055_04229735_04231409
CI01000055_04265119_04272728.mRNA mRNA downstream 164624 4265119 ~ 4273913 (+) False CI01000055_04265119_04272728
CI01000055_04288760_04295553.mRNA mRNA downstream 188265 4288760 ~ 4295782 (+) True CI01000055_04288760_04295553
TU271353 other upstream 1552669 2541122 ~ 2541235 (+) True G239173
TU271351 other upstream 1552669 2541201 ~ 2541235 (+) True G239173
TU270647 other upstream 2427543 1668410 ~ 1669244 (+) True G238534
TU269823 other upstream 3676855 418925 ~ 419932 (+) True G237840
TU269631 other upstream 4075625 20902 ~ 21162 (+) True G237680
TU272036 other downstream 61755 4162250 ~ 4213402 (+) True G239761
TU272029 other downstream 153715 4254210 ~ 4255092 (+) True G239755
TU272088 other downstream 163532 4264027 ~ 4264066 (+) True G239802
TU272472 other downstream 1064997 5165492 ~ 5166647 (+) True CI01000055_05163240_05166231
TU272428 other downstream 1436023 5536518 ~ 5543812 (+) True G240099

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00047917 True 2069 mRNA 0.48 4 NC_007136.7 28272908 ~ 28276091 (+)