RNA id: TU272021


Basic Information

Item Value
RNA id TU272021
length 435
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G239748
representative True

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 4126527 ~ 4127026 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGTACTTATGTAAGTAATTTTCTGTAATTACATCTATAATTAGACTGTTGACCGTTCCCATACACCTTAACCCACCCTTAAACCTACCCATACCACCAAACCTTACCCGTATCCCACCTCAATATCAGCACAAGTGTTTTGAAATACAACATGGACACAAACCCTAACATTGTAATTATTTTTTGATTACATACATAGTAGTTAAGGACACCTAATATAAAGGATAAGCCTAGCTCGATGTGACCAAGTTAGCTCAGGCTATGGAGCTATCTATCTGTCTATCTTAGATACCATCTAAGACATTAATAAAGATAACAAGTTATATAATTTGAAAGTTCTAAAGGTTTACTGTCAATCTGTGGTGTCTGTTTTACAATATAGATATTGTAATTTGTGTCGAGTGTGCAAATGACAACACGCAAAATCAAAACGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271891 lncRNA upstream 160564 3880366 ~ 3965963 (+) False G239643
TU271893 lncRNA upstream 160564 3880366 ~ 3965963 (+) False G239643
TU271895 lncRNA upstream 160564 3936542 ~ 3965963 (+) True G239643
TU271899 lncRNA upstream 200668 3869732 ~ 3925859 (+) True G239646
TU271841 lncRNA upstream 418523 3707467 ~ 3708004 (+) True G239599
TU272028 lncRNA downstream 122492 4249518 ~ 4250917 (+) True G239754
TU272085 lncRNA downstream 132304 4259330 ~ 4261799 (+) True G239799
TU272089 lncRNA downstream 145970 4272996 ~ 4273415 (+) True CI01000055_04265119_04272728
TU272090 lncRNA downstream 147269 4274295 ~ 4274524 (+) True G239804
TU272093 lncRNA downstream 147944 4274970 ~ 4278760 (+) False G239806
CI01000055_04104413_04124421.mRNA mRNA upstream 2106 4104413 ~ 4124421 (+) True CI01000055_04104413_04124421
CI01000055_04097751_04100235.mRNA mRNA upstream 26032 4096787 ~ 4100495 (+) True CI01000055_04097751_04100235
CI01000055_04035172_04094367.mRNA mRNA upstream 31871 4035097 ~ 4094656 (+) True CI01000055_04035172_04094367
CI01000055_04023182_04033823.mRNA mRNA upstream 92632 4023182 ~ 4033895 (+) True CI01000055_04023182_04033823
CI01000055_03909546_03911972.mRNA mRNA upstream 214348 3908867 ~ 3912179 (+) True CI01000055_03909546_03911972
CI01000055_04220373_04228785.mRNA mRNA downstream 93347 4220373 ~ 4228906 (+) True CI01000055_04220373_04228785
CI01000055_04229735_04231409.mRNA mRNA downstream 102709 4229735 ~ 4231602 (+) True CI01000055_04229735_04231409
CI01000055_04265119_04272728.mRNA mRNA downstream 138093 4265119 ~ 4273913 (+) False CI01000055_04265119_04272728
CI01000055_04288760_04295553.mRNA mRNA downstream 161734 4288760 ~ 4295782 (+) True CI01000055_04288760_04295553
CI01000055_04297863_04299835.mRNA mRNA downstream 170837 4297863 ~ 4300318 (+) True CI01000055_04297863_04299835
TU271353 other upstream 1582409 2541122 ~ 2541235 (+) True G239173
TU271351 other upstream 1582409 2541201 ~ 2541235 (+) True G239173
TU270647 other upstream 2457283 1668410 ~ 1669244 (+) True G238534
TU269823 other upstream 3706595 418925 ~ 419932 (+) True G237840
TU269631 other upstream 4105365 20902 ~ 21162 (+) True G237680
TU272036 other downstream 35224 4162250 ~ 4213402 (+) True G239761
TU272029 other downstream 127184 4254210 ~ 4255092 (+) True G239755
TU272088 other downstream 137001 4264027 ~ 4264066 (+) True G239802
TU272472 other downstream 1038466 5165492 ~ 5166647 (+) True CI01000055_05163240_05166231
TU272428 other downstream 1409492 5536518 ~ 5543812 (+) True G240099

Expression Profile