CI01000299_00082987_00089134


Basic Information

Item Value
gene id CI01000299_00082987_00089134
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 82723 ~ 89594 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_00082987_00089134.mRNA
AGATAAAAATAGCTGGCCAACATCTCGAAACATCAGATGCATTCTATATTTGTTAGACAGAAACACCTGCTTTACAGCAGCACATTAGATGACATTCTTCCACACCTGTGAAGCACCGTGTCAATTTTTTGCACAACTGACATCTTCAGTTCATGATTCTGTCTGCATAACCGCCAACTCTCTGATCACAAACAGGAAATTCTTTCTGTTTCCTCCAGTTGATTGTAAAAAGGTTCTGGAACATTTGCCGTGTTCAGAAGCGCAATGAGCTGCCAACACAATCTGTTATTTTTACTCCTCTGTGGCTTCGCTGCACTCTCTGAGGAATGTAAAAAAGATCTACAAGAGGGAACATCCTGCTTCATTAAGCTACCAGAAAAATACAATGACAAATCTAAGGACATAAAATGGACCCATGTCTCCAGTGACGCCGTAATTGAGAGGAAAAATAACAAGATAAAAAAGTCAAACGCTGAAGGTTTAACAATGGATGAAGATGGATCGTTAAGATTTGAAAGTGTTAGTCTGAATTACATGGGCAAATATTTATACACTGTTACTAGTTCTGATGGTACAGAGGTTGGTAAAGATGAAGTGGAAATTAAAGTATATGGTAAGGTGGCAAATATACCCTTCCAACACAATAACAAAATAAGATTGTATATTTCTATAGTAGTTACAGTAGTAGGAAATAACCACCATGTTTCTGTTACAGCAAAGGCCCCTAAACCTGTTGTGAAGATTAGCTGCACCGCTGCTGGGAATGCTACTCTCACCTGTGACATGGGAAACAGTAAAGATCTGACTGTATCCTGGTATAAAGAAGGCAACTACTTCCAGAATGATAAAAAATCTCAAGTGTTCTTGTCATCTGCACAAGTACTAGAGAATAAACTGTACTCATGCATGGCAAGCAATCCTGTCAGCAAGGAAACAAGTGATAGTATTACAGTATCATGTAAAGGCCCAGGTCTTACTAAACTCTTTGGCTTTGATTTCTGGCTCATGGTGGGCATCCTAGCCGGCGGAGCAGCCCTTCTACTGCTGCTAATTTGTGTTCTCGTCATCTGCGCATGTCGAAGCTGTCATCAACGCACGAAGCGTCAACAAGATGAAGAAGAGTTAAGGCTAGCAGATCTTACCCCAGGACATACCAGTACAAACAGATCCAAACAGACCGCTAGGGGGCAACCGGCACCCCCCATCCCGCAAGAAGACCCCATGCCCTGCAACCCATCTCCGGAAACCCCGCCTCGAACCCAGAATCAACCCAAAGCCCAGATCCGTGCTCGACCCCCACCACCGCCTCAGGACGACGATGAGGAAGACCCGCCTCCCTTACCTCGCCCGAGGAACAAACAGCACCGAACCAAGAGAAATCAAGAGCCGTACCGACCAATGGAATGAGATGCTTGAATGTTCACTGAAGGATAGTAATATGGGACTTTCTTAGAGTGATTTTCATTGACTTAAAGCCATATTTTGATGGTAAGGGTGTCACTAAAGAAATAGTTTTCTAAAAATGACAATTCGGTCATATACTCACCCTCATGATGTTTCAAACTATTAGCTATTATTACTAAACTATTATTTCCTTTTTTTCATCTTAGGCAGAATGTCCAAGCTGTTCTTGTCCATATACAAGGAAAGTAGATGGTGATTTATAAGCTTACCATAAAAAAAAAAAAAAAAACGTCCTTACGAATTGTGTGCTATACTAAGTCTTCTGAAGTCAATTTATGTCATGATTTACAATGCAAAATATTGACCTTTTTTGTTAGAGATTAACAAAATTGAATCTTCCAAACAATGTTTTTTGTCTTACCCTAAATCATTATAAATATATATTTTTTTCTCTTTATTTAGA

Function

NR:

description
T-cell surface antigen CD2 precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_00082987_00089134.mRNA True 1867 mRNA 0.40 4 82723 89594

Neighbor

gene id symbol gene type direction distance location
CI01000299_00069742_00072011 NA coding upstream 10639 69642 ~ 72084 (+)
CI01000299_00053877_00063101 NA coding upstream 19223 51951 ~ 63500 (+)
CI01000299_00042567_00045857 NA coding upstream 36532 42454 ~ 46191 (+)
CI01000299_00013442_00032151 NA coding upstream 49649 12783 ~ 33074 (+)
CI01000299_00005753_00010092 NA coding upstream 72498 5635 ~ 10225 (+)
CI01000299_00097393_00132755 NA coding downstream 7799 97393 ~ 132755 (+)
CI01000299_00151569_00153623 SLC5A3A coding downstream 61925 151519 ~ 154472 (+)
CI01000299_00255175_00294177 MBNL2 coding downstream 165581 255175 ~ 294177 (+)
CI01000299_00315123_00328550 RAP2B, RAP2C, RAP2A, RAP2AB, RAP2A.S coding downstream 225529 315123 ~ 330163 (+)
CI01000299_00345042_00361660 KPNB3, IPO5.L, IPO5.S, IPO5 coding downstream 255448 345042 ~ 362086 (+)
G403952 NA non-coding downstream 460907 550501 ~ 550742 (+)
G403965 NA non-coding downstream 493162 582756 ~ 583123 (+)
G403971 NA non-coding downstream 513238 602832 ~ 603583 (+)
G404016 NA non-coding downstream 559821 649415 ~ 649814 (+)
G404137 NA non-coding downstream 981014 1070608 ~ 1075893 (+)
G403578 NA other upstream 10452 35462 ~ 72271 (+)
G403609 NA other downstream 274545 364139 ~ 410788 (+)
G403972 NA other downstream 515276 604870 ~ 606350 (+)
G405609 NA other downstream 3065003 3154597 ~ 3155174 (+)
CI01000299_04131136_04133439 PCNP other downstream 4041664 4131060 ~ 4133941 (+)
G405842 NA other downstream 4205939 4295533 ~ 4320141 (+)

Expression


Co-expression Network